Model info
| Transcription factor | Ptf1a | ||||||||
| Model | PTF1A_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCAGCTGbbnbbbbYYhv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.963 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Twist-like factors {1.2.3.2} | ||||||||
| MGI | MGI:1328312 | ||||||||
| EntrezGene | GeneID:19213 (SSTAR profile) | ||||||||
| UniProt ID | PTF1A_MOUSE | ||||||||
| UniProt AC | Q9QX98 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Ptf1a expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 76.0 | 223.0 | 181.0 | 20.0 |
| 02 | 7.0 | 477.0 | 6.0 | 10.0 |
| 03 | 470.0 | 5.0 | 3.0 | 22.0 |
| 04 | 3.0 | 22.0 | 383.0 | 92.0 |
| 05 | 38.0 | 434.0 | 11.0 | 17.0 |
| 06 | 7.0 | 2.0 | 1.0 | 490.0 |
| 07 | 5.0 | 8.0 | 467.0 | 20.0 |
| 08 | 10.0 | 222.0 | 137.0 | 131.0 |
| 09 | 28.0 | 212.0 | 60.0 | 200.0 |
| 10 | 74.0 | 157.0 | 119.0 | 150.0 |
| 11 | 41.0 | 205.0 | 125.0 | 129.0 |
| 12 | 67.0 | 207.0 | 70.0 | 156.0 |
| 13 | 73.0 | 116.0 | 113.0 | 198.0 |
| 14 | 27.0 | 173.0 | 68.0 | 232.0 |
| 15 | 36.0 | 202.0 | 35.0 | 227.0 |
| 16 | 32.0 | 301.0 | 66.0 | 101.0 |
| 17 | 121.0 | 220.0 | 33.0 | 126.0 |
| 18 | 90.0 | 242.0 | 88.0 | 80.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.49 | 0.573 | 0.366 | -1.77 |
| 02 | -2.694 | 1.33 | -2.819 | -2.394 |
| 03 | 1.315 | -2.961 | -3.325 | -1.681 |
| 04 | -3.325 | -1.681 | 1.111 | -0.302 |
| 05 | -1.163 | 1.236 | -2.311 | -1.92 |
| 06 | -2.694 | -3.573 | -3.903 | 1.357 |
| 07 | -2.961 | -2.584 | 1.309 | -1.77 |
| 08 | -2.394 | 0.569 | 0.091 | 0.046 |
| 09 | -1.454 | 0.523 | -0.721 | 0.465 |
| 10 | -0.516 | 0.225 | -0.049 | 0.18 |
| 11 | -1.09 | 0.49 | 0.0 | 0.031 |
| 12 | -0.613 | 0.5 | -0.57 | 0.219 |
| 13 | -0.529 | -0.074 | -0.1 | 0.455 |
| 14 | -1.489 | 0.322 | -0.599 | 0.613 |
| 15 | -1.215 | 0.475 | -1.242 | 0.591 |
| 16 | -1.328 | 0.872 | -0.628 | -0.21 |
| 17 | -0.032 | 0.56 | -1.298 | 0.008 |
| 18 | -0.324 | 0.655 | -0.346 | -0.439 |