Model info
| Transcription factor | RARA (GeneCards) | ||||||||
| Model | RARA_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vAGGKCAvvv | ||||||||
| Best auROC (human) | 0.948 | ||||||||
| Best auROC (mouse) | 0.874 | ||||||||
| Peak sets in benchmark (human) | 29 | ||||||||
| Peak sets in benchmark (mouse) | 32 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Retinoic acid receptors (NR1B) {2.1.2.1} | ||||||||
| HGNC | HGNC:9864 | ||||||||
| EntrezGene | GeneID:5914 (SSTAR profile) | ||||||||
| UniProt ID | RARA_HUMAN | ||||||||
| UniProt AC | P10276 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RARA expression | ||||||||
| ReMap ChIP-seq dataset list | RARA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 173.0 | 150.0 | 168.0 | 9.0 |
| 02 | 415.0 | 5.0 | 77.0 | 3.0 |
| 03 | 7.0 | 0.0 | 490.0 | 3.0 |
| 04 | 5.0 | 4.0 | 486.0 | 5.0 |
| 05 | 17.0 | 30.0 | 94.0 | 359.0 |
| 06 | 1.0 | 473.0 | 20.0 | 6.0 |
| 07 | 486.0 | 3.0 | 9.0 | 2.0 |
| 08 | 72.0 | 125.0 | 275.0 | 28.0 |
| 09 | 169.0 | 85.0 | 217.0 | 29.0 |
| 10 | 75.0 | 81.0 | 274.0 | 70.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.322 | 0.18 | 0.293 | -2.484 |
| 02 | 1.191 | -2.961 | -0.477 | -3.325 |
| 03 | -2.694 | -4.4 | 1.357 | -3.325 |
| 04 | -2.961 | -3.126 | 1.349 | -2.961 |
| 05 | -1.92 | -1.389 | -0.281 | 1.047 |
| 06 | -3.903 | 1.322 | -1.77 | -2.819 |
| 07 | 1.349 | -3.325 | -2.484 | -3.573 |
| 08 | -0.543 | 0.0 | 0.782 | -1.454 |
| 09 | 0.298 | -0.38 | 0.546 | -1.421 |
| 10 | -0.503 | -0.427 | 0.778 | -0.57 |