Model info
| Transcription factor | RFX1 (GeneCards) | ||||||||
| Model | RFX1_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 22 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbbbSbGTTGCCWdGGvvMSvv | ||||||||
| Best auROC (human) | 0.712 | ||||||||
| Best auROC (mouse) | 0.995 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 457 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX1 (EF-C) {3.3.3.0.1} | ||||||||
| HGNC | HGNC:9982 | ||||||||
| EntrezGene | GeneID:5989 (SSTAR profile) | ||||||||
| UniProt ID | RFX1_HUMAN | ||||||||
| UniProt AC | P22670 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RFX1 expression | ||||||||
| ReMap ChIP-seq dataset list | RFX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 33.439 | 170.643 | 186.949 | 65.501 |
| 02 | 49.722 | 208.785 | 122.246 | 75.777 |
| 03 | 30.693 | 196.424 | 146.642 | 82.771 |
| 04 | 42.095 | 183.178 | 171.267 | 59.992 |
| 05 | 24.117 | 271.609 | 112.34 | 48.464 |
| 06 | 62.452 | 155.665 | 158.03 | 80.383 |
| 07 | 3.186 | 3.932 | 447.435 | 1.978 |
| 08 | 0.909 | 48.601 | 0.92 | 406.1 |
| 09 | 10.351 | 85.655 | 3.853 | 356.672 |
| 10 | 14.507 | 6.226 | 410.779 | 25.019 |
| 11 | 1.041 | 410.49 | 0.979 | 44.021 |
| 12 | 0.0 | 360.509 | 5.323 | 90.699 |
| 13 | 338.069 | 28.219 | 44.203 | 46.04 |
| 14 | 74.136 | 29.64 | 141.89 | 210.865 |
| 15 | 21.326 | 1.767 | 432.286 | 1.151 |
| 16 | 40.716 | 29.651 | 377.022 | 9.142 |
| 17 | 103.823 | 185.389 | 97.882 | 69.437 |
| 18 | 184.776 | 44.167 | 193.305 | 34.283 |
| 19 | 284.968 | 96.294 | 57.402 | 17.866 |
| 20 | 32.661 | 326.162 | 55.569 | 42.139 |
| 21 | 67.247 | 140.328 | 215.056 | 33.9 |
| 22 | 69.86 | 130.346 | 227.824 | 28.501 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.196 | 0.398 | 0.488 | -0.546 |
| 02 | -0.814 | 0.598 | 0.068 | -0.403 |
| 03 | -1.278 | 0.537 | 0.248 | -0.316 |
| 04 | -0.975 | 0.468 | 0.401 | -0.631 |
| 05 | -1.506 | 0.859 | -0.016 | -0.839 |
| 06 | -0.592 | 0.307 | 0.322 | -0.345 |
| 07 | -3.199 | -3.053 | 1.356 | -3.495 |
| 08 | -3.859 | -0.836 | -3.854 | 1.26 |
| 09 | -2.276 | -0.283 | -3.067 | 1.13 |
| 10 | -1.976 | -2.702 | 1.271 | -1.472 |
| 11 | -3.806 | 1.27 | -3.831 | -0.932 |
| 12 | -4.325 | 1.141 | -2.826 | -0.226 |
| 13 | 1.077 | -1.358 | -0.928 | -0.888 |
| 14 | -0.424 | -1.311 | 0.215 | 0.608 |
| 15 | -1.621 | -3.557 | 1.322 | -3.764 |
| 16 | -1.007 | -1.311 | 1.186 | -2.383 |
| 17 | -0.093 | 0.48 | -0.151 | -0.488 |
| 18 | 0.477 | -0.929 | 0.521 | -1.172 |
| 19 | 0.907 | -0.168 | -0.674 | -1.786 |
| 20 | -1.219 | 1.041 | -0.706 | -0.974 |
| 21 | -0.52 | 0.204 | 0.627 | -1.183 |
| 22 | -0.483 | 0.131 | 0.685 | -1.348 |