Model info
| Transcription factor | RFX2 (GeneCards) | ||||||||
| Model | RFX2_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | YbGTTGCCWKGG | ||||||||
| Best auROC (human) | 0.965 | ||||||||
| Best auROC (mouse) | 0.996 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | RFX-related factors {3.3.3} | ||||||||
| TF subfamily | RFX2 {3.3.3.0.2} | ||||||||
| HGNC | HGNC:9983 | ||||||||
| EntrezGene | GeneID:5990 (SSTAR profile) | ||||||||
| UniProt ID | RFX2_HUMAN | ||||||||
| UniProt AC | P48378 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RFX2 expression | ||||||||
| ReMap ChIP-seq dataset list | RFX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 20.0 | 281.0 | 79.0 | 120.0 |
| 02 | 38.0 | 106.0 | 188.0 | 168.0 |
| 03 | 2.0 | 0.0 | 497.0 | 1.0 |
| 04 | 0.0 | 1.0 | 0.0 | 499.0 |
| 05 | 10.0 | 19.0 | 3.0 | 468.0 |
| 06 | 17.0 | 6.0 | 460.0 | 17.0 |
| 07 | 1.0 | 466.0 | 1.0 | 32.0 |
| 08 | 1.0 | 375.0 | 0.0 | 124.0 |
| 09 | 395.0 | 30.0 | 22.0 | 53.0 |
| 10 | 62.0 | 19.0 | 92.0 | 327.0 |
| 11 | 35.0 | 2.0 | 462.0 | 1.0 |
| 12 | 75.0 | 19.0 | 404.0 | 2.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.77 | 0.803 | -0.452 | -0.04 |
| 02 | -1.163 | -0.163 | 0.404 | 0.293 |
| 03 | -3.573 | -4.4 | 1.371 | -3.903 |
| 04 | -4.4 | -3.903 | -4.4 | 1.375 |
| 05 | -2.394 | -1.818 | -3.325 | 1.311 |
| 06 | -1.92 | -2.819 | 1.294 | -1.92 |
| 07 | -3.903 | 1.307 | -3.903 | -1.328 |
| 08 | -3.903 | 1.09 | -4.4 | -0.008 |
| 09 | 1.142 | -1.389 | -1.681 | -0.841 |
| 10 | -0.689 | -1.818 | -0.302 | 0.954 |
| 11 | -1.242 | -3.573 | 1.298 | -3.903 |
| 12 | -0.503 | -1.818 | 1.165 | -3.573 |