Transcription factor | Rxra | ||||||||
Model | RXRA_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 25 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dRRddvddbvdvAGKTCAvRRhvdn | ||||||||
Best auROC (human) | 0.772 | ||||||||
Best auROC (mouse) | 0.988 | ||||||||
Peak sets in benchmark (human) | 52 | ||||||||
Peak sets in benchmark (mouse) | 158 | ||||||||
Aligned words | 503 | ||||||||
TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
MGI | MGI:98214 | ||||||||
EntrezGene | GeneID:20181 (SSTAR profile) | ||||||||
UniProt ID | RXRA_MOUSE | ||||||||
UniProt AC | P28700 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Rxra expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 44.0 | 15.0 | 114.0 | 2.0 | 31.0 | 21.0 | 19.0 | 7.0 | 38.0 | 14.0 | 113.0 | 2.0 | 15.0 | 13.0 | 46.0 | 6.0 |
02 | 18.0 | 9.0 | 91.0 | 10.0 | 30.0 | 13.0 | 1.0 | 19.0 | 44.0 | 21.0 | 201.0 | 26.0 | 4.0 | 2.0 | 7.0 | 4.0 |
03 | 34.0 | 5.0 | 45.0 | 12.0 | 16.0 | 6.0 | 11.0 | 12.0 | 93.0 | 9.0 | 155.0 | 43.0 | 15.0 | 4.0 | 33.0 | 7.0 |
04 | 46.0 | 4.0 | 102.0 | 6.0 | 10.0 | 2.0 | 5.0 | 7.0 | 35.0 | 10.0 | 81.0 | 118.0 | 8.0 | 6.0 | 20.0 | 40.0 |
05 | 5.0 | 11.0 | 80.0 | 3.0 | 6.0 | 8.0 | 0.0 | 8.0 | 36.0 | 20.0 | 138.0 | 14.0 | 4.0 | 117.0 | 31.0 | 19.0 |
06 | 16.0 | 4.0 | 17.0 | 14.0 | 118.0 | 16.0 | 5.0 | 17.0 | 70.0 | 16.0 | 140.0 | 23.0 | 12.0 | 5.0 | 18.0 | 9.0 |
07 | 52.0 | 44.0 | 52.0 | 68.0 | 7.0 | 10.0 | 5.0 | 19.0 | 12.0 | 18.0 | 32.0 | 118.0 | 9.0 | 7.0 | 18.0 | 29.0 |
08 | 22.0 | 14.0 | 40.0 | 4.0 | 20.0 | 31.0 | 6.0 | 22.0 | 14.0 | 41.0 | 35.0 | 17.0 | 7.0 | 158.0 | 46.0 | 23.0 |
09 | 10.0 | 17.0 | 25.0 | 11.0 | 158.0 | 33.0 | 17.0 | 36.0 | 37.0 | 29.0 | 35.0 | 26.0 | 18.0 | 15.0 | 25.0 | 8.0 |
10 | 91.0 | 20.0 | 100.0 | 12.0 | 45.0 | 14.0 | 4.0 | 31.0 | 52.0 | 16.0 | 18.0 | 16.0 | 22.0 | 10.0 | 33.0 | 16.0 |
11 | 97.0 | 15.0 | 90.0 | 8.0 | 21.0 | 14.0 | 17.0 | 8.0 | 62.0 | 13.0 | 77.0 | 3.0 | 11.0 | 12.0 | 48.0 | 4.0 |
12 | 154.0 | 0.0 | 35.0 | 2.0 | 45.0 | 2.0 | 5.0 | 2.0 | 188.0 | 1.0 | 39.0 | 4.0 | 14.0 | 0.0 | 9.0 | 0.0 |
13 | 7.0 | 3.0 | 388.0 | 3.0 | 0.0 | 0.0 | 3.0 | 0.0 | 1.0 | 0.0 | 87.0 | 0.0 | 0.0 | 2.0 | 4.0 | 2.0 |
14 | 1.0 | 0.0 | 6.0 | 1.0 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 0.0 | 259.0 | 223.0 | 0.0 | 0.0 | 4.0 | 1.0 |
15 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 25.0 | 13.0 | 232.0 | 1.0 | 1.0 | 3.0 | 220.0 |
16 | 0.0 | 5.0 | 0.0 | 0.0 | 1.0 | 25.0 | 0.0 | 0.0 | 1.0 | 14.0 | 1.0 | 0.0 | 4.0 | 422.0 | 15.0 | 12.0 |
17 | 6.0 | 0.0 | 0.0 | 0.0 | 459.0 | 3.0 | 2.0 | 2.0 | 15.0 | 0.0 | 0.0 | 1.0 | 10.0 | 1.0 | 1.0 | 0.0 |
18 | 259.0 | 74.0 | 129.0 | 28.0 | 1.0 | 0.0 | 2.0 | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 2.0 | 1.0 |
19 | 30.0 | 4.0 | 223.0 | 4.0 | 20.0 | 18.0 | 22.0 | 14.0 | 36.0 | 25.0 | 58.0 | 16.0 | 2.0 | 12.0 | 11.0 | 5.0 |
20 | 17.0 | 14.0 | 49.0 | 8.0 | 20.0 | 15.0 | 7.0 | 17.0 | 28.0 | 17.0 | 243.0 | 26.0 | 4.0 | 8.0 | 14.0 | 13.0 |
21 | 21.0 | 19.0 | 20.0 | 9.0 | 15.0 | 15.0 | 2.0 | 22.0 | 44.0 | 78.0 | 41.0 | 150.0 | 8.0 | 11.0 | 22.0 | 23.0 |
22 | 21.0 | 30.0 | 34.0 | 3.0 | 26.0 | 71.0 | 13.0 | 13.0 | 12.0 | 18.0 | 42.0 | 13.0 | 8.0 | 142.0 | 29.0 | 25.0 |
23 | 17.0 | 8.0 | 34.0 | 8.0 | 173.0 | 31.0 | 17.0 | 40.0 | 31.0 | 22.0 | 39.0 | 26.0 | 12.0 | 11.0 | 29.0 | 2.0 |
24 | 44.0 | 27.0 | 94.0 | 68.0 | 17.0 | 14.0 | 7.0 | 34.0 | 26.0 | 25.0 | 50.0 | 18.0 | 4.0 | 19.0 | 33.0 | 20.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.339 | -0.721 | 1.285 | -2.584 | -0.008 | -0.392 | -0.49 | -1.454 | 0.193 | -0.788 | 1.276 | -2.584 | -0.721 | -0.86 | 0.383 | -1.6 |
02 | -0.543 | -1.215 | 1.061 | -1.114 | -0.04 | -0.86 | -3.126 | -0.49 | 0.339 | -0.392 | 1.851 | -0.181 | -1.975 | -2.584 | -1.454 | -1.975 |
03 | 0.083 | -1.77 | 0.361 | -0.938 | -0.658 | -1.6 | -1.022 | -0.938 | 1.082 | -1.215 | 1.592 | 0.316 | -0.721 | -1.975 | 0.054 | -1.454 |
04 | 0.383 | -1.975 | 1.174 | -1.6 | -1.114 | -2.584 | -1.77 | -1.454 | 0.112 | -1.114 | 0.945 | 1.32 | -1.328 | -1.6 | -0.439 | 0.244 |
05 | -1.77 | -1.022 | 0.932 | -2.234 | -1.6 | -1.328 | -4.4 | -1.328 | 0.14 | -0.439 | 1.476 | -0.788 | -1.975 | 1.311 | -0.008 | -0.49 |
06 | -0.658 | -1.975 | -0.599 | -0.788 | 1.32 | -0.658 | -1.77 | -0.599 | 0.8 | -0.658 | 1.49 | -0.302 | -0.938 | -1.77 | -0.543 | -1.215 |
07 | 0.504 | 0.339 | 0.504 | 0.771 | -1.454 | -1.114 | -1.77 | -0.49 | -0.938 | -0.543 | 0.023 | 1.32 | -1.215 | -1.454 | -0.543 | -0.074 |
08 | -0.346 | -0.788 | 0.244 | -1.975 | -0.439 | -0.008 | -1.6 | -0.346 | -0.788 | 0.269 | 0.112 | -0.599 | -1.454 | 1.611 | 0.383 | -0.302 |
09 | -1.114 | -0.599 | -0.22 | -1.022 | 1.611 | 0.054 | -0.599 | 0.14 | 0.167 | -0.074 | 0.112 | -0.181 | -0.543 | -0.721 | -0.22 | -1.328 |
10 | 1.061 | -0.439 | 1.155 | -0.938 | 0.361 | -0.788 | -1.975 | -0.008 | 0.504 | -0.658 | -0.543 | -0.658 | -0.346 | -1.114 | 0.054 | -0.658 |
11 | 1.124 | -0.721 | 1.05 | -1.328 | -0.392 | -0.788 | -0.599 | -1.328 | 0.679 | -0.86 | 0.894 | -2.234 | -1.022 | -0.938 | 0.425 | -1.975 |
12 | 1.585 | -4.4 | 0.112 | -2.584 | 0.361 | -2.584 | -1.77 | -2.584 | 1.784 | -3.126 | 0.219 | -1.975 | -0.788 | -4.4 | -1.215 | -4.4 |
13 | -1.454 | -2.234 | 2.508 | -2.234 | -4.4 | -4.4 | -2.234 | -4.4 | -3.126 | -4.4 | 1.016 | -4.4 | -4.4 | -2.584 | -1.975 | -2.584 |
14 | -3.126 | -4.4 | -1.6 | -3.126 | -4.4 | -4.4 | -1.77 | -4.4 | -4.4 | -4.4 | 2.104 | 1.955 | -4.4 | -4.4 | -1.975 | -3.126 |
15 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -1.975 | -0.22 | -0.86 | 1.994 | -3.126 | -3.126 | -2.234 | 1.941 |
16 | -4.4 | -1.77 | -4.4 | -4.4 | -3.126 | -0.22 | -4.4 | -4.4 | -3.126 | -0.788 | -3.126 | -4.4 | -1.975 | 2.592 | -0.721 | -0.938 |
17 | -1.6 | -4.4 | -4.4 | -4.4 | 2.676 | -2.234 | -2.584 | -2.584 | -0.721 | -4.4 | -4.4 | -3.126 | -1.114 | -3.126 | -3.126 | -4.4 |
18 | 2.104 | 0.855 | 1.408 | -0.108 | -3.126 | -4.4 | -2.584 | -3.126 | -3.126 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -2.584 | -3.126 |
19 | -0.04 | -1.975 | 1.955 | -1.975 | -0.439 | -0.543 | -0.346 | -0.788 | 0.14 | -0.22 | 0.613 | -0.658 | -2.584 | -0.938 | -1.022 | -1.77 |
20 | -0.599 | -0.788 | 0.445 | -1.328 | -0.439 | -0.721 | -1.454 | -0.599 | -0.108 | -0.599 | 2.04 | -0.181 | -1.975 | -1.328 | -0.788 | -0.86 |
21 | -0.392 | -0.49 | -0.439 | -1.215 | -0.721 | -0.721 | -2.584 | -0.346 | 0.339 | 0.907 | 0.269 | 1.559 | -1.328 | -1.022 | -0.346 | -0.302 |
22 | -0.392 | -0.04 | 0.083 | -2.234 | -0.181 | 0.814 | -0.86 | -0.86 | -0.938 | -0.543 | 0.293 | -0.86 | -1.328 | 1.504 | -0.074 | -0.22 |
23 | -0.599 | -1.328 | 0.083 | -1.328 | 1.701 | -0.008 | -0.599 | 0.244 | -0.008 | -0.346 | 0.219 | -0.181 | -0.938 | -1.022 | -0.074 | -2.584 |
24 | 0.339 | -0.144 | 1.093 | 0.771 | -0.599 | -0.788 | -1.454 | 0.083 | -0.181 | -0.22 | 0.465 | -0.543 | -1.975 | -0.49 | 0.054 | -0.439 |