Model info
| Transcription factor | Rxrg | ||||||||
| Model | RXRG_MOUSE.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RAGKTCARRS | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.946 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | RXR-related receptors (NR2) {2.1.3} | ||||||||
| TF subfamily | Retinoid X receptors (NR2B) {2.1.3.1} | ||||||||
| MGI | MGI:98216 | ||||||||
| EntrezGene | GeneID:20183 (SSTAR profile) | ||||||||
| UniProt ID | RXRG_MOUSE | ||||||||
| UniProt AC | P28705 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rxrg expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 195.0 | 41.0 | 241.0 | 22.0 |
| 02 | 395.0 | 5.0 | 97.0 | 2.0 |
| 03 | 8.0 | 12.0 | 465.0 | 14.0 |
| 04 | 16.0 | 19.0 | 237.0 | 227.0 |
| 05 | 12.0 | 19.0 | 48.0 | 420.0 |
| 06 | 13.0 | 432.0 | 44.0 | 10.0 |
| 07 | 433.0 | 21.0 | 20.0 | 25.0 |
| 08 | 327.0 | 36.0 | 113.0 | 23.0 |
| 09 | 67.0 | 25.0 | 382.0 | 25.0 |
| 10 | 43.0 | 60.0 | 369.0 | 27.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.442 | -1.088 | 0.653 | -1.679 |
| 02 | 1.144 | -2.959 | -0.248 | -3.571 |
| 03 | -2.582 | -2.232 | 1.307 | -2.094 |
| 04 | -1.973 | -1.816 | 0.636 | 0.593 |
| 05 | -2.232 | -1.816 | -0.936 | 1.205 |
| 06 | -2.161 | 1.233 | -1.02 | -2.392 |
| 07 | 1.236 | -1.723 | -1.768 | -1.56 |
| 08 | 0.956 | -1.213 | -0.098 | -1.638 |
| 09 | -0.611 | -1.56 | 1.111 | -1.56 |
| 10 | -1.042 | -0.719 | 1.076 | -1.487 |