Model info
| Transcription factor | RAX (GeneCards) | ||||||||
| Model | RX_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTAATTRvYhn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 340 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | RAX {3.1.3.22} | ||||||||
| HGNC | HGNC:18662 | ||||||||
| EntrezGene | GeneID:30062 (SSTAR profile) | ||||||||
| UniProt ID | RX_HUMAN | ||||||||
| UniProt AC | Q9Y2V3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RAX expression | ||||||||
| ReMap ChIP-seq dataset list | RAX datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.5 | 71.5 | 32.5 | 173.5 |
| 02 | 12.5 | 0.5 | 4.5 | 317.5 |
| 03 | 332.25 | 1.25 | 1.25 | 0.25 |
| 04 | 333.25 | 0.25 | 1.25 | 0.25 |
| 05 | 0.0 | 1.0 | 0.0 | 334.0 |
| 06 | 0.0 | 1.0 | 0.0 | 334.0 |
| 07 | 185.0 | 0.0 | 144.0 | 6.0 |
| 08 | 124.5 | 51.5 | 147.5 | 11.5 |
| 09 | 17.0 | 162.0 | 14.0 | 142.0 |
| 10 | 142.25 | 70.25 | 22.25 | 100.25 |
| 11 | 161.25 | 50.25 | 50.25 | 73.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.368 | -0.155 | -0.92 | 0.719 |
| 02 | -1.809 | -3.775 | -2.661 | 1.32 |
| 03 | 1.365 | -3.45 | -3.45 | -3.912 |
| 04 | 1.368 | -3.912 | -3.45 | -3.912 |
| 05 | -4.071 | -3.548 | -4.071 | 1.37 |
| 06 | -4.071 | -3.548 | -4.071 | 1.37 |
| 07 | 0.783 | -4.071 | 0.535 | -2.436 |
| 08 | 0.391 | -0.476 | 0.559 | -1.884 |
| 09 | -1.53 | 0.651 | -1.707 | 0.521 |
| 10 | 0.523 | -0.173 | -1.279 | 0.177 |
| 11 | 0.647 | -0.5 | -0.5 | -0.132 |