Model info
| Transcription factor | SALL4 (GeneCards) | ||||||||
| Model | SALL4_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvdGGGWGKG | ||||||||
| Best auROC (human) | 0.724 | ||||||||
| Best auROC (mouse) | 0.924 | ||||||||
| Peak sets in benchmark (human) | 1 | ||||||||
| Peak sets in benchmark (mouse) | 21 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Factors with multiple dispersed zinc fingers {2.3.4} | ||||||||
| TF subfamily | Sal-like factors {2.3.4.3} | ||||||||
| HGNC | HGNC:15924 | ||||||||
| EntrezGene | GeneID:57167 (SSTAR profile) | ||||||||
| UniProt ID | SALL4_HUMAN | ||||||||
| UniProt AC | Q9UJQ4 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SALL4 expression | ||||||||
| ReMap ChIP-seq dataset list | SALL4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 90.0 | 69.0 | 257.0 | 84.0 |
| 02 | 67.0 | 129.0 | 239.0 | 65.0 |
| 03 | 180.0 | 3.0 | 172.0 | 145.0 |
| 04 | 6.0 | 1.0 | 486.0 | 7.0 |
| 05 | 1.0 | 2.0 | 491.0 | 6.0 |
| 06 | 10.0 | 81.0 | 402.0 | 7.0 |
| 07 | 187.0 | 15.0 | 5.0 | 293.0 |
| 08 | 3.0 | 1.0 | 494.0 | 2.0 |
| 09 | 49.0 | 8.0 | 330.0 | 113.0 |
| 10 | 59.0 | 12.0 | 407.0 | 22.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.324 | -0.584 | 0.714 | -0.392 |
| 02 | -0.613 | 0.031 | 0.642 | -0.643 |
| 03 | 0.361 | -3.325 | 0.316 | 0.147 |
| 04 | -2.819 | -3.903 | 1.349 | -2.694 |
| 05 | -3.903 | -3.573 | 1.359 | -2.819 |
| 06 | -2.394 | -0.427 | 1.16 | -2.694 |
| 07 | 0.399 | -2.034 | -2.961 | 0.845 |
| 08 | -3.325 | -3.903 | 1.365 | -3.573 |
| 09 | -0.918 | -2.584 | 0.963 | -0.1 |
| 10 | -0.737 | -2.234 | 1.172 | -1.681 |