Model info
| Transcription factor | Six2 | ||||||||
| Model | SIX2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KGWAAYhYRAbMYb | ||||||||
| Best auROC (human) | 0.963 | ||||||||
| Best auROC (mouse) | 0.946 | ||||||||
| Peak sets in benchmark (human) | 18 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | HD-SINE factors {3.1.6} | ||||||||
| TF subfamily | SIX1-like factors {3.1.6.1} | ||||||||
| MGI | MGI:102778 | ||||||||
| EntrezGene | GeneID:20472 (SSTAR profile) | ||||||||
| UniProt ID | SIX2_MOUSE | ||||||||
| UniProt AC | Q62232 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Six2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 95.0 | 5.0 | 99.0 | 301.0 |
| 02 | 4.0 | 1.0 | 491.0 | 4.0 |
| 03 | 284.0 | 35.0 | 20.0 | 161.0 |
| 04 | 434.0 | 38.0 | 8.0 | 20.0 |
| 05 | 497.0 | 2.0 | 1.0 | 0.0 |
| 06 | 27.0 | 240.0 | 31.0 | 202.0 |
| 07 | 123.0 | 201.0 | 42.0 | 134.0 |
| 08 | 61.0 | 87.0 | 51.0 | 301.0 |
| 09 | 110.0 | 17.0 | 348.0 | 25.0 |
| 10 | 497.0 | 2.0 | 1.0 | 0.0 |
| 11 | 43.0 | 78.0 | 186.0 | 193.0 |
| 12 | 233.0 | 217.0 | 16.0 | 34.0 |
| 13 | 70.0 | 295.0 | 30.0 | 105.0 |
| 14 | 59.0 | 192.0 | 101.0 | 148.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.271 | -2.961 | -0.23 | 0.872 |
| 02 | -3.126 | -3.903 | 1.359 | -3.126 |
| 03 | 0.814 | -1.242 | -1.77 | 0.25 |
| 04 | 1.236 | -1.163 | -2.584 | -1.77 |
| 05 | 1.371 | -3.573 | -3.903 | -4.4 |
| 06 | -1.489 | 0.646 | -1.358 | 0.475 |
| 07 | -0.016 | 0.47 | -1.067 | 0.069 |
| 08 | -0.705 | -0.357 | -0.879 | 0.872 |
| 09 | -0.126 | -1.92 | 1.016 | -1.561 |
| 10 | 1.371 | -3.573 | -3.903 | -4.4 |
| 11 | -1.044 | -0.464 | 0.393 | 0.43 |
| 12 | 0.617 | 0.546 | -1.975 | -1.27 |
| 13 | -0.57 | 0.852 | -1.389 | -0.172 |
| 14 | -0.737 | 0.425 | -0.21 | 0.167 |