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Model info
Transcription factorSox2
ModelSOX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnbSYWTTGTbhWKbhnMhn
Best auROC (human)0.971
Best auROC (mouse)0.976
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words512
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98364
EntrezGeneGeneID:20674
(SSTAR profile)
UniProt IDSOX2_MOUSE
UniProt ACP48432
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.38871
0.0005 12.34481
0.0001 16.28326
GTEx tissue expression atlas Sox2 expression
Motifs in JASPAR
MA0142.1 (Pou5f1::Sox2; Mus musculus)
MA0143.1 (Sox2; Mus musculus)
MA0143.2 (Sox2; Mus musculus)
MA0143.3 (Sox2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.017.030.033.011.027.06.074.017.042.046.038.010.025.044.068.0
020.029.011.010.05.085.05.016.09.076.026.015.04.0131.053.025.0
030.014.01.03.013.0180.07.0121.00.060.05.030.02.047.05.012.0
0410.00.00.05.0142.00.00.0159.014.00.00.04.0105.00.02.059.0
050.00.03.0268.00.00.00.00.00.00.00.02.00.00.01.0226.0
060.00.00.00.00.00.00.00.00.00.00.04.04.00.00.0492.0
071.00.03.00.00.00.00.00.00.00.00.00.016.058.0415.07.0
082.01.00.014.028.00.00.030.027.00.03.0388.03.00.00.04.0
0912.08.012.028.00.00.00.01.01.02.00.00.032.0103.059.0242.0
1038.02.00.05.067.022.01.023.040.013.04.014.0123.087.031.030.0
1114.00.03.0251.017.023.04.080.03.03.06.024.05.011.015.041.0
121.07.029.02.06.020.03.08.00.06.019.03.013.028.0286.069.0
131.08.07.04.03.031.02.025.024.0194.043.076.09.035.010.028.0
1412.00.06.019.0159.027.05.077.027.09.014.012.048.019.017.049.0
15149.021.047.029.020.015.03.017.020.05.08.09.091.05.029.032.0
16205.034.029.012.020.015.01.010.054.09.08.016.027.014.022.024.0
1755.042.038.0171.018.023.04.027.023.08.010.019.04.08.019.031.0
1826.017.014.043.020.024.04.033.016.017.021.017.042.040.090.076.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.938-0.599-0.040.054-1.022-0.144-1.60.855-0.5990.2930.3830.193-1.114-0.220.3390.771
02-4.4-0.074-1.022-1.114-1.770.993-1.77-0.658-1.2150.881-0.181-0.721-1.9751.4240.523-0.22
03-4.4-0.788-3.126-2.234-0.861.741-1.4541.345-4.40.646-1.77-0.04-2.5840.404-1.77-0.938
04-1.114-4.4-4.4-1.771.504-4.4-4.41.617-0.788-4.4-4.4-1.9751.203-4.4-2.5840.63
05-4.4-4.4-2.2342.138-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.584-4.4-4.4-3.1261.968
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.975-1.975-4.4-4.42.745
07-3.126-4.4-2.234-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-0.6580.6132.575-1.454
08-2.584-3.126-4.4-0.788-0.108-4.4-4.4-0.04-0.144-4.4-2.2342.508-2.234-4.4-4.4-1.975
09-0.938-1.328-0.938-0.108-4.4-4.4-4.4-3.126-3.126-2.584-4.4-4.40.0231.1840.632.036
100.193-2.584-4.4-1.770.756-0.346-3.126-0.3020.244-0.86-1.975-0.7881.3611.016-0.008-0.04
11-0.788-4.4-2.2342.073-0.599-0.302-1.9750.932-2.234-2.234-1.6-0.26-1.77-1.022-0.7210.269
12-3.126-1.454-0.074-2.584-1.6-0.439-2.234-1.328-4.4-1.6-0.49-2.234-0.86-0.1082.2030.785
13-3.126-1.328-1.454-1.975-2.234-0.008-2.584-0.22-0.261.8150.3160.881-1.2150.112-1.114-0.108
14-0.938-4.4-1.6-0.491.617-0.144-1.770.894-0.144-1.215-0.788-0.9380.425-0.49-0.5990.445
151.552-0.3920.404-0.074-0.439-0.721-2.234-0.599-0.439-1.77-1.328-1.2151.061-1.77-0.0740.023
161.8710.083-0.074-0.938-0.439-0.721-3.126-1.1140.542-1.215-1.328-0.658-0.144-0.788-0.346-0.26
170.560.2930.1931.69-0.543-0.302-1.975-0.144-0.302-1.328-1.114-0.49-1.975-1.328-0.49-0.008
18-0.181-0.599-0.7880.316-0.439-0.26-1.9750.054-0.658-0.599-0.392-0.5990.2930.2441.050.881