Model info
| Transcription factor | SOX3 (GeneCards) | ||||||||
| Model | SOX3_HUMAN.H11DI.0.B | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bSYWTTGTbn | ||||||||
| Best auROC (human) | 0.685 | ||||||||
| Best auROC (mouse) | 0.888 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 456 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group B {4.1.1.2} | ||||||||
| HGNC | HGNC:11199 | ||||||||
| EntrezGene | GeneID:6658 (SSTAR profile) | ||||||||
| UniProt ID | SOX3_HUMAN | ||||||||
| UniProt AC | P41225 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX3 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 1.0 | 22.0 | 21.0 | 8.0 | 4.0 | 89.0 | 4.0 | 31.0 | 1.0 | 110.0 | 21.0 | 19.0 | 2.0 | 74.0 | 31.0 | 15.0 |
| 02 | 2.0 | 4.0 | 2.0 | 0.0 | 17.0 | 199.0 | 3.0 | 76.0 | 1.0 | 60.0 | 8.0 | 8.0 | 4.0 | 60.0 | 8.0 | 1.0 |
| 03 | 5.0 | 1.0 | 1.0 | 17.0 | 110.0 | 16.0 | 0.0 | 197.0 | 14.0 | 0.0 | 0.0 | 7.0 | 38.0 | 2.0 | 2.0 | 43.0 |
| 04 | 0.0 | 2.0 | 6.0 | 159.0 | 0.0 | 0.0 | 1.0 | 18.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 8.0 | 11.0 | 245.0 |
| 05 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 10.0 | 0.0 | 0.0 | 1.0 | 17.0 | 1.0 | 7.0 | 7.0 | 410.0 |
| 06 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 2.0 | 5.0 | 0.0 | 1.0 | 0.0 | 7.0 | 0.0 | 13.0 | 102.0 | 320.0 | 2.0 |
| 07 | 0.0 | 2.0 | 0.0 | 12.0 | 32.0 | 4.0 | 1.0 | 68.0 | 37.0 | 6.0 | 3.0 | 286.0 | 0.0 | 1.0 | 0.0 | 1.0 |
| 08 | 16.0 | 20.0 | 17.0 | 16.0 | 3.0 | 4.0 | 0.0 | 6.0 | 1.0 | 3.0 | 0.0 | 0.0 | 23.0 | 128.0 | 85.0 | 131.0 |
| 09 | 11.0 | 8.0 | 14.0 | 10.0 | 31.0 | 51.0 | 8.0 | 65.0 | 17.0 | 37.0 | 17.0 | 31.0 | 18.0 | 52.0 | 43.0 | 40.0 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -3.033 | -0.248 | -0.294 | -1.231 | -1.879 | 1.136 | -1.879 | 0.09 | -3.033 | 1.347 | -0.294 | -0.392 | -2.489 | 0.953 | 0.09 | -0.624 |
| 02 | -2.489 | -1.879 | -2.489 | -4.318 | -0.501 | 1.939 | -2.138 | 0.979 | -3.033 | 0.744 | -1.231 | -1.231 | -1.879 | 0.744 | -1.231 | -3.033 |
| 03 | -1.674 | -3.033 | -3.033 | -0.501 | 1.347 | -0.561 | -4.318 | 1.928 | -0.691 | -4.318 | -4.318 | -1.358 | 0.291 | -2.489 | -2.489 | 0.413 |
| 04 | -4.318 | -2.489 | -1.503 | 1.715 | -4.318 | -4.318 | -3.033 | -0.445 | -4.318 | -4.318 | -4.318 | -2.138 | -4.318 | -1.231 | -0.925 | 2.146 |
| 05 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -1.017 | -4.318 | -4.318 | -3.033 | -0.501 | -3.033 | -1.358 | -1.358 | 2.66 |
| 06 | -4.318 | -3.033 | -4.318 | -4.318 | -4.318 | -2.489 | -1.674 | -4.318 | -3.033 | -4.318 | -1.358 | -4.318 | -0.763 | 1.272 | 2.413 | -2.489 |
| 07 | -4.318 | -2.489 | -4.318 | -0.84 | 0.121 | -1.879 | -3.033 | 0.868 | 0.264 | -1.503 | -2.138 | 2.301 | -4.318 | -3.033 | -4.318 | -3.033 |
| 08 | -0.561 | -0.342 | -0.501 | -0.561 | -2.138 | -1.879 | -4.318 | -1.503 | -3.033 | -2.138 | -4.318 | -4.318 | -0.205 | 1.498 | 1.09 | 1.521 |
| 09 | -0.925 | -1.231 | -0.691 | -1.017 | 0.09 | 0.583 | -1.231 | 0.824 | -0.501 | 0.264 | -0.501 | 0.09 | -0.445 | 0.602 | 0.413 | 0.342 |