Transcription factor | Sox4 | ||||||||
Model | SOX4_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbYCTTTGTYYbb | ||||||||
Best auROC (human) | 0.637 | ||||||||
Best auROC (mouse) | 0.981 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 7 | ||||||||
Aligned words | 500 | ||||||||
TF family | SOX-related factors {4.1.1} | ||||||||
TF subfamily | Group C {4.1.1.3} | ||||||||
MGI | MGI:98366 | ||||||||
EntrezGene | GeneID:20677 (SSTAR profile) | ||||||||
UniProt ID | SOX4_MOUSE | ||||||||
UniProt AC | Q06831 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Sox4 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.0 | 9.0 | 21.0 | 31.0 | 7.0 | 50.0 | 42.0 | 47.0 | 8.0 | 59.0 | 48.0 | 40.0 | 3.0 | 53.0 | 22.0 | 60.0 |
02 | 1.0 | 4.0 | 7.0 | 6.0 | 8.0 | 83.0 | 21.0 | 59.0 | 0.0 | 86.0 | 16.0 | 31.0 | 5.0 | 92.0 | 10.0 | 71.0 |
03 | 1.0 | 3.0 | 4.0 | 6.0 | 2.0 | 201.0 | 3.0 | 59.0 | 0.0 | 50.0 | 0.0 | 4.0 | 1.0 | 150.0 | 0.0 | 16.0 |
04 | 1.0 | 0.0 | 1.0 | 2.0 | 40.0 | 8.0 | 3.0 | 353.0 | 0.0 | 1.0 | 1.0 | 5.0 | 13.0 | 2.0 | 2.0 | 68.0 |
05 | 0.0 | 2.0 | 2.0 | 50.0 | 0.0 | 0.0 | 0.0 | 11.0 | 0.0 | 2.0 | 1.0 | 4.0 | 1.0 | 5.0 | 11.0 | 411.0 |
06 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 8.0 | 2.0 | 0.0 | 0.0 | 12.0 | 0.0 | 10.0 | 3.0 | 463.0 |
07 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 7.0 | 2.0 | 2.0 | 0.0 | 1.0 | 2.0 | 0.0 | 9.0 | 26.0 | 431.0 | 18.0 |
08 | 1.0 | 0.0 | 2.0 | 6.0 | 0.0 | 1.0 | 0.0 | 33.0 | 3.0 | 6.0 | 5.0 | 423.0 | 1.0 | 0.0 | 0.0 | 19.0 |
09 | 0.0 | 1.0 | 0.0 | 4.0 | 0.0 | 1.0 | 3.0 | 3.0 | 0.0 | 4.0 | 2.0 | 1.0 | 7.0 | 154.0 | 63.0 | 257.0 |
10 | 1.0 | 4.0 | 1.0 | 1.0 | 2.0 | 98.0 | 5.0 | 55.0 | 6.0 | 35.0 | 9.0 | 18.0 | 9.0 | 166.0 | 25.0 | 65.0 |
11 | 6.0 | 7.0 | 5.0 | 0.0 | 24.0 | 109.0 | 28.0 | 142.0 | 2.0 | 12.0 | 7.0 | 19.0 | 6.0 | 46.0 | 48.0 | 39.0 |
12 | 13.0 | 9.0 | 14.0 | 2.0 | 24.0 | 65.0 | 29.0 | 56.0 | 13.0 | 40.0 | 18.0 | 17.0 | 18.0 | 75.0 | 51.0 | 56.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -4.4 | -1.215 | -0.392 | -0.008 | -1.454 | 0.465 | 0.293 | 0.404 | -1.328 | 0.63 | 0.425 | 0.244 | -2.234 | 0.523 | -0.346 | 0.646 |
02 | -3.126 | -1.975 | -1.454 | -1.6 | -1.328 | 0.969 | -0.392 | 0.63 | -4.4 | 1.004 | -0.658 | -0.008 | -1.77 | 1.072 | -1.114 | 0.814 |
03 | -3.126 | -2.234 | -1.975 | -1.6 | -2.584 | 1.851 | -2.234 | 0.63 | -4.4 | 0.465 | -4.4 | -1.975 | -3.126 | 1.559 | -4.4 | -0.658 |
04 | -3.126 | -4.4 | -3.126 | -2.584 | 0.244 | -1.328 | -2.234 | 2.413 | -4.4 | -3.126 | -3.126 | -1.77 | -0.86 | -2.584 | -2.584 | 0.771 |
05 | -4.4 | -2.584 | -2.584 | 0.465 | -4.4 | -4.4 | -4.4 | -1.022 | -4.4 | -2.584 | -3.126 | -1.975 | -3.126 | -1.77 | -1.022 | 2.565 |
06 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | -3.126 | -4.4 | -1.328 | -2.584 | -4.4 | -4.4 | -0.938 | -4.4 | -1.114 | -2.234 | 2.684 |
07 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -1.454 | -2.584 | -2.584 | -4.4 | -3.126 | -2.584 | -4.4 | -1.215 | -0.181 | 2.613 | -0.543 |
08 | -3.126 | -4.4 | -2.584 | -1.6 | -4.4 | -3.126 | -4.4 | 0.054 | -2.234 | -1.6 | -1.77 | 2.594 | -3.126 | -4.4 | -4.4 | -0.49 |
09 | -4.4 | -3.126 | -4.4 | -1.975 | -4.4 | -3.126 | -2.234 | -2.234 | -4.4 | -1.975 | -2.584 | -3.126 | -1.454 | 1.585 | 0.695 | 2.096 |
10 | -3.126 | -1.975 | -3.126 | -3.126 | -2.584 | 1.135 | -1.77 | 0.56 | -1.6 | 0.112 | -1.215 | -0.543 | -1.215 | 1.66 | -0.22 | 0.726 |
11 | -1.6 | -1.454 | -1.77 | -4.4 | -0.26 | 1.241 | -0.108 | 1.504 | -2.584 | -0.938 | -1.454 | -0.49 | -1.6 | 0.383 | 0.425 | 0.219 |
12 | -0.86 | -1.215 | -0.788 | -2.584 | -0.26 | 0.726 | -0.074 | 0.578 | -0.86 | 0.244 | -0.543 | -0.599 | -0.543 | 0.868 | 0.485 | 0.578 |