Model info
| Transcription factor | SP1 (GeneCards) | ||||||||
| Model | SP1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vvKGGGCGGGGSbd | ||||||||
| Best auROC (human) | 0.999 | ||||||||
| Best auROC (mouse) | 0.941 | ||||||||
| Peak sets in benchmark (human) | 53 | ||||||||
| Peak sets in benchmark (mouse) | 11 | ||||||||
| Aligned words | 432 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| HGNC | HGNC:11205 | ||||||||
| EntrezGene | GeneID:6667 (SSTAR profile) | ||||||||
| UniProt ID | SP1_HUMAN | ||||||||
| UniProt AC | P08047 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SP1 expression | ||||||||
| ReMap ChIP-seq dataset list | SP1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 116.0 | 120.0 | 150.0 | 46.0 |
| 02 | 101.0 | 72.0 | 233.0 | 26.0 |
| 03 | 43.0 | 14.0 | 322.0 | 53.0 |
| 04 | 31.0 | 8.0 | 388.0 | 5.0 |
| 05 | 4.0 | 9.0 | 415.0 | 4.0 |
| 06 | 2.0 | 9.0 | 418.0 | 3.0 |
| 07 | 15.0 | 405.0 | 0.0 | 12.0 |
| 08 | 11.0 | 3.0 | 410.0 | 8.0 |
| 09 | 2.0 | 8.0 | 387.0 | 35.0 |
| 10 | 32.0 | 6.0 | 380.0 | 14.0 |
| 11 | 34.0 | 35.0 | 353.0 | 10.0 |
| 12 | 25.0 | 335.0 | 47.0 | 25.0 |
| 13 | 27.0 | 239.0 | 94.0 | 72.0 |
| 14 | 71.0 | 64.0 | 189.0 | 108.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.071 | 0.104 | 0.325 | -0.835 |
| 02 | -0.066 | -0.399 | 0.761 | -1.381 |
| 03 | -0.9 | -1.954 | 1.083 | -0.698 |
| 04 | -1.214 | -2.443 | 1.269 | -2.822 |
| 05 | -2.988 | -2.343 | 1.336 | -2.988 |
| 06 | -3.438 | -2.343 | 1.343 | -3.188 |
| 07 | -1.892 | 1.312 | -4.279 | -2.092 |
| 08 | -2.169 | -3.188 | 1.324 | -2.443 |
| 09 | -3.438 | -2.443 | 1.266 | -1.098 |
| 10 | -1.184 | -2.679 | 1.248 | -1.954 |
| 11 | -1.126 | -1.098 | 1.175 | -2.252 |
| 12 | -1.418 | 1.123 | -0.814 | -1.418 |
| 13 | -1.346 | 0.787 | -0.137 | -0.399 |
| 14 | -0.412 | -0.514 | 0.554 | 0.0 |