Model info
| Transcription factor | SP2 (GeneCards) | ||||||||
| Model | SP2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SvvvvRRRGGCGGRRSbnvvSv | ||||||||
| Best auROC (human) | 0.972 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 16 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 499 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| HGNC | HGNC:11207 | ||||||||
| EntrezGene | GeneID:6668 (SSTAR profile) | ||||||||
| UniProt ID | SP2_HUMAN | ||||||||
| UniProt AC | Q02086 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SP2 expression | ||||||||
| ReMap ChIP-seq dataset list | SP2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 64.149 | 124.873 | 284.087 | 26.083 |
| 02 | 89.849 | 122.861 | 261.049 | 25.431 |
| 03 | 75.251 | 140.861 | 251.918 | 31.161 |
| 04 | 77.127 | 159.086 | 209.946 | 53.033 |
| 05 | 143.753 | 110.87 | 191.865 | 52.703 |
| 06 | 87.46 | 49.97 | 327.891 | 33.871 |
| 07 | 69.888 | 27.829 | 352.486 | 48.988 |
| 08 | 147.773 | 27.391 | 314.733 | 9.293 |
| 09 | 18.866 | 2.117 | 458.559 | 19.649 |
| 10 | 6.075 | 10.404 | 477.689 | 5.023 |
| 11 | 21.675 | 444.151 | 6.391 | 26.974 |
| 12 | 16.153 | 8.173 | 449.421 | 25.444 |
| 13 | 6.264 | 10.048 | 466.539 | 16.339 |
| 14 | 49.575 | 43.373 | 392.389 | 13.855 |
| 15 | 110.215 | 88.644 | 290.382 | 9.95 |
| 16 | 51.828 | 301.859 | 109.148 | 36.356 |
| 17 | 24.988 | 253.651 | 116.53 | 104.022 |
| 18 | 100.491 | 94.942 | 195.979 | 107.779 |
| 19 | 64.726 | 118.297 | 262.84 | 53.328 |
| 20 | 90.861 | 128.761 | 232.642 | 46.926 |
| 21 | 75.134 | 92.595 | 294.176 | 37.286 |
| 22 | 61.262 | 162.919 | 247.06 | 27.95 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.654 | 0.001 | 0.816 | -1.52 |
| 02 | -0.324 | -0.015 | 0.732 | -1.544 |
| 03 | -0.498 | 0.12 | 0.696 | -1.351 |
| 04 | -0.474 | 0.24 | 0.515 | -0.839 |
| 05 | 0.14 | -0.117 | 0.426 | -0.845 |
| 06 | -0.35 | -0.897 | 0.958 | -1.272 |
| 07 | -0.57 | -1.459 | 1.03 | -0.916 |
| 08 | 0.167 | -1.474 | 0.918 | -2.455 |
| 09 | -1.823 | -3.539 | 1.292 | -1.785 |
| 10 | -2.807 | -2.358 | 1.333 | -2.956 |
| 11 | -1.694 | 1.261 | -2.767 | -1.488 |
| 12 | -1.965 | -2.564 | 1.272 | -1.543 |
| 13 | -2.783 | -2.388 | 1.31 | -1.955 |
| 14 | -0.905 | -1.034 | 1.137 | -2.104 |
| 15 | -0.123 | -0.337 | 0.837 | -2.396 |
| 16 | -0.862 | 0.876 | -0.132 | -1.204 |
| 17 | -1.56 | 0.703 | -0.068 | -0.18 |
| 18 | -0.214 | -0.27 | 0.447 | -0.145 |
| 19 | -0.645 | -0.053 | 0.738 | -0.834 |
| 20 | -0.313 | 0.031 | 0.617 | -0.958 |
| 21 | -0.499 | -0.294 | 0.85 | -1.18 |
| 22 | -0.699 | 0.264 | 0.677 | -1.455 |