Model info
| Transcription factor | SPDEF (GeneCards) | ||||||||
| Model | SPDEF_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dWvCCGKATvWhvh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 1928 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | SPDEF-like factors {3.5.2.7} | ||||||||
| HGNC | HGNC:17257 | ||||||||
| EntrezGene | GeneID:25803 (SSTAR profile) | ||||||||
| UniProt ID | SPDEF_HUMAN | ||||||||
| UniProt AC | O95238 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SPDEF expression | ||||||||
| ReMap ChIP-seq dataset list | SPDEF datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 657.957 | 304.226 | 611.851 | 314.688 |
| 02 | 984.724 | 185.862 | 72.125 | 646.01 |
| 03 | 434.272 | 932.22 | 429.819 | 92.41 |
| 04 | 9.261 | 1863.878 | 8.484 | 7.098 |
| 05 | 709.705 | 1170.447 | 5.712 | 2.856 |
| 06 | 0.0 | 0.0 | 1888.721 | 0.0 |
| 07 | 189.113 | 33.935 | 1376.781 | 288.892 |
| 08 | 1886.558 | 0.0 | 0.0 | 2.163 |
| 09 | 761.228 | 0.52 | 0.52 | 1126.454 |
| 10 | 326.213 | 274.787 | 1033.721 | 254.0 |
| 11 | 1042.191 | 179.016 | 117.658 | 549.856 |
| 12 | 865.846 | 371.033 | 250.869 | 400.974 |
| 13 | 336.691 | 387.594 | 925.408 | 239.028 |
| 14 | 348.969 | 321.085 | 318.313 | 900.355 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.331 | -0.437 | 0.258 | -0.404 |
| 02 | 0.733 | -0.926 | -1.857 | 0.312 |
| 03 | -0.083 | 0.678 | -0.094 | -1.615 |
| 04 | -3.75 | 1.37 | -3.822 | -3.966 |
| 05 | 0.406 | 0.905 | -4.133 | -4.605 |
| 06 | -5.527 | -5.527 | 1.383 | -5.527 |
| 07 | -0.909 | -2.583 | 1.068 | -0.489 |
| 08 | 1.382 | -5.527 | -5.527 | -4.763 |
| 09 | 0.476 | -5.284 | -5.284 | 0.867 |
| 10 | -0.368 | -0.539 | 0.781 | -0.617 |
| 11 | 0.79 | -0.963 | -1.378 | 0.152 |
| 12 | 0.605 | -0.24 | -0.629 | -0.163 |
| 13 | -0.337 | -0.197 | 0.671 | -0.677 |
| 14 | -0.301 | -0.384 | -0.392 | 0.644 |