Transcription factor | Spi1 | ||||||||
Model | SPI1_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvvRRWGRGGAAGTGvnv | ||||||||
Best auROC (human) | 0.999 | ||||||||
Best auROC (mouse) | 0.999 | ||||||||
Peak sets in benchmark (human) | 80 | ||||||||
Peak sets in benchmark (mouse) | 204 | ||||||||
Aligned words | 505 | ||||||||
TF family | Ets-related factors {3.5.2} | ||||||||
TF subfamily | Spi-like factors {3.5.2.5} | ||||||||
MGI | MGI:98282 | ||||||||
EntrezGene | GeneID:20375 (SSTAR profile) | ||||||||
UniProt ID | SPI1_MOUSE | ||||||||
UniProt AC | P17433 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Spi1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 48.0 | 20.0 | 50.0 | 9.0 | 82.0 | 35.0 | 17.0 | 25.0 | 63.0 | 17.0 | 33.0 | 17.0 | 26.0 | 14.0 | 26.0 | 17.0 |
02 | 80.0 | 19.0 | 116.0 | 4.0 | 49.0 | 19.0 | 9.0 | 9.0 | 69.0 | 7.0 | 45.0 | 5.0 | 22.0 | 12.0 | 25.0 | 9.0 |
03 | 166.0 | 7.0 | 39.0 | 8.0 | 35.0 | 5.0 | 5.0 | 12.0 | 152.0 | 5.0 | 26.0 | 12.0 | 16.0 | 3.0 | 2.0 | 6.0 |
04 | 301.0 | 4.0 | 52.0 | 12.0 | 9.0 | 4.0 | 5.0 | 2.0 | 43.0 | 11.0 | 16.0 | 2.0 | 13.0 | 1.0 | 16.0 | 8.0 |
05 | 287.0 | 4.0 | 21.0 | 54.0 | 12.0 | 0.0 | 1.0 | 7.0 | 46.0 | 2.0 | 30.0 | 11.0 | 2.0 | 0.0 | 5.0 | 17.0 |
06 | 43.0 | 24.0 | 274.0 | 6.0 | 6.0 | 0.0 | 0.0 | 0.0 | 9.0 | 6.0 | 42.0 | 0.0 | 13.0 | 1.0 | 75.0 | 0.0 |
07 | 28.0 | 4.0 | 39.0 | 0.0 | 31.0 | 0.0 | 0.0 | 0.0 | 284.0 | 34.0 | 72.0 | 1.0 | 1.0 | 0.0 | 5.0 | 0.0 |
08 | 6.0 | 0.0 | 338.0 | 0.0 | 19.0 | 0.0 | 19.0 | 0.0 | 9.0 | 0.0 | 107.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
09 | 1.0 | 0.0 | 33.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 465.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
10 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 498.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
11 | 499.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
12 | 14.0 | 79.0 | 405.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
13 | 0.0 | 0.0 | 0.0 | 14.0 | 8.0 | 5.0 | 0.0 | 66.0 | 10.0 | 21.0 | 4.0 | 370.0 | 0.0 | 0.0 | 0.0 | 1.0 |
14 | 0.0 | 2.0 | 16.0 | 0.0 | 2.0 | 14.0 | 10.0 | 0.0 | 0.0 | 1.0 | 3.0 | 0.0 | 6.0 | 27.0 | 418.0 | 0.0 |
15 | 3.0 | 0.0 | 5.0 | 0.0 | 16.0 | 14.0 | 4.0 | 10.0 | 178.0 | 97.0 | 149.0 | 23.0 | 0.0 | 0.0 | 0.0 | 0.0 |
16 | 105.0 | 19.0 | 62.0 | 11.0 | 28.0 | 26.0 | 18.0 | 39.0 | 33.0 | 43.0 | 56.0 | 26.0 | 3.0 | 10.0 | 17.0 | 3.0 |
17 | 112.0 | 21.0 | 31.0 | 5.0 | 35.0 | 28.0 | 6.0 | 29.0 | 44.0 | 47.0 | 42.0 | 20.0 | 7.0 | 16.0 | 34.0 | 22.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.427 | -0.437 | 0.467 | -1.213 | 0.959 | 0.114 | -0.597 | -0.218 | 0.697 | -0.597 | 0.056 | -0.597 | -0.179 | -0.786 | -0.179 | -0.597 |
02 | 0.934 | -0.488 | 1.305 | -1.973 | 0.447 | -0.488 | -1.213 | -1.213 | 0.787 | -1.452 | 0.363 | -1.768 | -0.344 | -0.936 | -0.218 | -1.213 |
03 | 1.662 | -1.452 | 0.221 | -1.326 | 0.114 | -1.768 | -1.768 | -0.936 | 1.574 | -1.768 | -0.179 | -0.936 | -0.656 | -2.232 | -2.582 | -1.598 |
04 | 2.256 | -1.973 | 0.506 | -0.936 | -1.213 | -1.973 | -1.768 | -2.582 | 0.318 | -1.02 | -0.656 | -2.582 | -0.858 | -3.124 | -0.656 | -1.326 |
05 | 2.208 | -1.973 | -0.39 | 0.544 | -0.936 | -4.398 | -3.124 | -1.452 | 0.385 | -2.582 | -0.038 | -1.02 | -2.582 | -4.398 | -1.768 | -0.597 |
06 | 0.318 | -0.258 | 2.162 | -1.598 | -1.598 | -4.398 | -4.398 | -4.398 | -1.213 | -1.598 | 0.294 | -4.398 | -0.858 | -3.124 | 0.87 | -4.398 |
07 | -0.106 | -1.973 | 0.221 | -4.398 | -0.006 | -4.398 | -4.398 | -4.398 | 2.198 | 0.085 | 0.83 | -3.124 | -3.124 | -4.398 | -1.768 | -4.398 |
08 | -1.598 | -4.398 | 2.372 | -4.398 | -0.488 | -4.398 | -0.488 | -4.398 | -1.213 | -4.398 | 1.224 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 |
09 | -3.124 | -4.398 | 0.056 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 2.69 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
10 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 2.759 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
11 | 2.761 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
12 | -0.786 | 0.922 | 2.552 | -3.124 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
13 | -4.398 | -4.398 | -4.398 | -0.786 | -1.326 | -1.768 | -4.398 | 0.743 | -1.112 | -0.39 | -1.973 | 2.462 | -4.398 | -4.398 | -4.398 | -3.124 |
14 | -4.398 | -2.582 | -0.656 | -4.398 | -2.582 | -0.786 | -1.112 | -4.398 | -4.398 | -3.124 | -2.232 | -4.398 | -1.598 | -0.142 | 2.584 | -4.398 |
15 | -2.232 | -4.398 | -1.768 | -4.398 | -0.656 | -0.786 | -1.973 | -1.112 | 1.732 | 1.126 | 1.554 | -0.3 | -4.398 | -4.398 | -4.398 | -4.398 |
16 | 1.205 | -0.488 | 0.681 | -1.02 | -0.106 | -0.179 | -0.541 | 0.221 | 0.056 | 0.318 | 0.58 | -0.179 | -2.232 | -1.112 | -0.597 | -2.232 |
17 | 1.27 | -0.39 | -0.006 | -1.768 | 0.114 | -0.106 | -1.598 | -0.072 | 0.341 | 0.406 | 0.294 | -0.437 | -1.452 | -0.656 | 0.085 | -0.344 |