Model info
| Transcription factor | SREBF2 (GeneCards) | ||||||||
| Model | SRBP2_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 13 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvvWGGvSWGRnb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 2363 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | SREBP factors {1.2.6.3} | ||||||||
| HGNC | HGNC:11290 | ||||||||
| EntrezGene | GeneID:6721 (SSTAR profile) | ||||||||
| UniProt ID | SRBP2_HUMAN | ||||||||
| UniProt AC | Q12772 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SREBF2 expression | ||||||||
| ReMap ChIP-seq dataset list | SREBF2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 609.707 | 577.904 | 878.334 | 276.055 |
| 02 | 405.721 | 707.176 | 964.952 | 264.152 |
| 03 | 494.205 | 386.733 | 1331.932 | 129.129 |
| 04 | 350.404 | 113.691 | 143.532 | 1734.374 |
| 05 | 50.244 | 77.738 | 2128.859 | 85.159 |
| 06 | 121.656 | 13.366 | 2201.523 | 5.456 |
| 07 | 411.337 | 516.625 | 1149.069 | 264.969 |
| 08 | 260.005 | 537.9 | 1514.69 | 29.404 |
| 09 | 677.944 | 351.217 | 25.805 | 1287.034 |
| 10 | 58.592 | 183.52 | 2042.551 | 57.336 |
| 11 | 1637.543 | 46.971 | 526.174 | 131.312 |
| 12 | 368.512 | 440.031 | 865.337 | 668.12 |
| 13 | 371.105 | 490.793 | 1055.59 | 424.512 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.04 | -0.013 | 0.404 | -0.748 |
| 02 | -0.365 | 0.188 | 0.498 | -0.792 |
| 03 | -0.169 | -0.413 | 0.82 | -1.5 |
| 04 | -0.511 | -1.625 | -1.396 | 1.084 |
| 05 | -2.421 | -1.998 | 1.288 | -1.909 |
| 06 | -1.559 | -3.648 | 1.322 | -4.375 |
| 07 | -0.352 | -0.125 | 0.673 | -0.789 |
| 08 | -0.808 | -0.085 | 0.948 | -2.931 |
| 09 | 0.146 | -0.509 | -3.053 | 0.786 |
| 10 | -2.273 | -1.153 | 1.247 | -2.294 |
| 11 | 1.026 | -2.486 | -0.106 | -1.484 |
| 12 | -0.461 | -0.285 | 0.39 | 0.132 |
| 13 | -0.454 | -0.176 | 0.588 | -0.32 |