Model info
| Transcription factor | Srf | ||||||||
| Model | SRF_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hKbCCWTWTWWGGbhdb | ||||||||
| Best auROC (human) | 0.95 | ||||||||
| Best auROC (mouse) | 0.986 | ||||||||
| Peak sets in benchmark (human) | 46 | ||||||||
| Peak sets in benchmark (mouse) | 37 | ||||||||
| Aligned words | 374 | ||||||||
| TF family | Responders to external signals (SRF/RLM1) {5.1.2} | ||||||||
| TF subfamily | SRF {5.1.2.0.1} | ||||||||
| MGI | MGI:106658 | ||||||||
| EntrezGene | GeneID:20807 (SSTAR profile) | ||||||||
| UniProt ID | SRF_MOUSE | ||||||||
| UniProt AC | Q9JM73 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Srf expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 45.0 | 77.0 | 36.0 | 216.0 |
| 02 | 28.0 | 36.0 | 82.0 | 228.0 |
| 03 | 24.0 | 117.0 | 95.0 | 138.0 |
| 04 | 4.0 | 357.0 | 4.0 | 9.0 |
| 05 | 3.0 | 355.0 | 0.0 | 16.0 |
| 06 | 121.0 | 17.0 | 2.0 | 234.0 |
| 07 | 24.0 | 12.0 | 14.0 | 324.0 |
| 08 | 238.0 | 18.0 | 15.0 | 103.0 |
| 09 | 10.0 | 18.0 | 5.0 | 341.0 |
| 10 | 164.0 | 25.0 | 9.0 | 176.0 |
| 11 | 68.0 | 9.0 | 14.0 | 283.0 |
| 12 | 46.0 | 3.0 | 320.0 | 5.0 |
| 13 | 12.0 | 1.0 | 352.0 | 9.0 |
| 14 | 46.0 | 205.0 | 69.0 | 54.0 |
| 15 | 101.0 | 168.0 | 19.0 | 86.0 |
| 16 | 199.0 | 38.0 | 44.0 | 93.0 |
| 17 | 59.0 | 96.0 | 67.0 | 152.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.715 | -0.191 | -0.93 | 0.828 |
| 02 | -1.17 | -0.93 | -0.129 | 0.882 |
| 03 | -1.316 | 0.221 | 0.016 | 0.384 |
| 04 | -2.852 | 1.328 | -2.852 | -2.204 |
| 05 | -3.054 | 1.323 | -4.161 | -1.693 |
| 06 | 0.254 | -1.637 | -3.306 | 0.908 |
| 07 | -1.316 | -1.952 | -1.814 | 1.232 |
| 08 | 0.925 | -1.584 | -1.751 | 0.095 |
| 09 | -2.113 | -1.584 | -2.685 | 1.283 |
| 10 | 0.555 | -1.277 | -2.204 | 0.625 |
| 11 | -0.313 | -2.204 | -1.814 | 1.097 |
| 12 | -0.693 | -3.054 | 1.219 | -2.685 |
| 13 | -1.952 | -3.645 | 1.314 | -2.204 |
| 14 | -0.693 | 0.777 | -0.298 | -0.538 |
| 15 | 0.076 | 0.579 | -1.534 | -0.082 |
| 16 | 0.747 | -0.878 | -0.736 | -0.005 |
| 17 | -0.451 | 0.026 | -0.327 | 0.48 |