Model info
| Transcription factor | Sry | ||||||||
| Model | SRY_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bWTTGTWWh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 108 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group A {4.1.1.1} | ||||||||
| MGI | MGI:98660 | ||||||||
| EntrezGene | GeneID:21674 (SSTAR profile) | ||||||||
| UniProt ID | SRY_MOUSE | ||||||||
| UniProt AC | Q05738 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sry expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 11.267 | 30.82 | 15.228 | 50.685 |
| 02 | 39.6 | 3.96 | 4.805 | 59.634 |
| 03 | 8.417 | 0.497 | 4.457 | 94.628 |
| 04 | 10.257 | 0.497 | 3.264 | 93.982 |
| 05 | 0.0 | 7.92 | 98.29 | 1.79 |
| 06 | 5.965 | 0.0 | 3.778 | 98.256 |
| 07 | 20.795 | 4.341 | 3.679 | 79.186 |
| 08 | 28.151 | 10.224 | 7.539 | 62.085 |
| 09 | 36.602 | 26.131 | 2.834 | 42.434 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.818 | 0.127 | -0.541 | 0.61 |
| 02 | 0.37 | -1.703 | -1.551 | 0.769 |
| 03 | -1.078 | -2.827 | -1.611 | 1.224 |
| 04 | -0.902 | -2.827 | -1.849 | 1.217 |
| 05 | -3.181 | -1.131 | 1.261 | -2.253 |
| 06 | -1.373 | -3.181 | -1.739 | 1.261 |
| 07 | -0.249 | -1.631 | -1.759 | 1.048 |
| 08 | 0.04 | -0.905 | -1.174 | 0.809 |
| 09 | 0.293 | -0.031 | -1.951 | 0.437 |