Transcription factor | TBX21 (GeneCards) | ||||||||
Model | TBX21_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vdvddRSTGWKRn | ||||||||
Best auROC (human) | 0.829 | ||||||||
Best auROC (mouse) | 0.831 | ||||||||
Peak sets in benchmark (human) | 7 | ||||||||
Peak sets in benchmark (mouse) | 17 | ||||||||
Aligned words | 497 | ||||||||
TF family | TBrain-related factors {6.5.2} | ||||||||
TF subfamily | TBX21 (T-bet) {6.5.2.0.3} | ||||||||
HGNC | HGNC:11599 | ||||||||
EntrezGene | GeneID:30009 (SSTAR profile) | ||||||||
UniProt ID | TBX21_HUMAN | ||||||||
UniProt AC | Q9UL17 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | TBX21 expression | ||||||||
ReMap ChIP-seq dataset list | TBX21 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 106.0 | 100.0 | 217.0 | 71.0 |
02 | 106.0 | 57.0 | 156.0 | 175.0 |
03 | 63.0 | 92.0 | 283.0 | 56.0 |
04 | 163.0 | 54.0 | 165.0 | 112.0 |
05 | 243.0 | 26.0 | 159.0 | 66.0 |
06 | 94.0 | 4.0 | 346.0 | 50.0 |
07 | 28.0 | 147.0 | 297.0 | 22.0 |
08 | 24.0 | 4.0 | 4.0 | 462.0 |
09 | 1.0 | 1.0 | 478.0 | 14.0 |
10 | 73.0 | 62.0 | 60.0 | 299.0 |
11 | 21.0 | 81.0 | 303.0 | 89.0 |
12 | 297.0 | 9.0 | 157.0 | 31.0 |
13 | 186.0 | 94.0 | 128.0 | 86.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.151 | -0.208 | 0.558 | -0.544 |
02 | -0.151 | -0.759 | 0.231 | 0.345 |
03 | -0.661 | -0.29 | 0.822 | -0.776 |
04 | 0.274 | -0.811 | 0.287 | -0.096 |
05 | 0.671 | -1.513 | 0.25 | -0.616 |
06 | -0.269 | -3.115 | 1.022 | -0.886 |
07 | -1.443 | 0.172 | 0.87 | -1.67 |
08 | -1.588 | -3.115 | -3.115 | 1.31 |
09 | -3.892 | -3.892 | 1.344 | -2.085 |
10 | -0.517 | -0.677 | -0.709 | 0.877 |
11 | -1.713 | -0.415 | 0.89 | -0.323 |
12 | 0.87 | -2.473 | 0.237 | -1.346 |
13 | 0.405 | -0.269 | 0.035 | -0.357 |