Model info
| Transcription factor | Tbx3 | ||||||||
| Model | TBX3_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRGGTGbbR | ||||||||
| Best auROC (human) | 0.756 | ||||||||
| Best auROC (mouse) | 0.955 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 114 | ||||||||
| TF family | TBX2-related factors {6.5.4} | ||||||||
| TF subfamily | TBX3 {6.5.4.0.2} | ||||||||
| MGI | MGI:98495 | ||||||||
| EntrezGene | GeneID:21386 (SSTAR profile) | ||||||||
| UniProt ID | TBX3_MOUSE | ||||||||
| UniProt AC | P70324 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tbx3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 52.0 | 17.0 | 42.0 | 3.0 |
| 02 | 77.0 | 0.0 | 30.0 | 7.0 |
| 03 | 16.0 | 2.0 | 95.0 | 1.0 |
| 04 | 0.0 | 2.0 | 111.0 | 1.0 |
| 05 | 0.0 | 0.0 | 2.0 | 112.0 |
| 06 | 0.0 | 1.0 | 113.0 | 0.0 |
| 07 | 2.0 | 49.0 | 24.0 | 39.0 |
| 08 | 13.0 | 28.0 | 35.0 | 38.0 |
| 09 | 68.0 | 3.0 | 27.0 | 16.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.583 | -0.49 | 0.375 | -1.959 |
| 02 | 0.968 | -3.222 | 0.049 | -1.288 |
| 03 | -0.547 | -2.232 | 1.176 | -2.609 |
| 04 | -3.222 | -2.232 | 1.33 | -2.609 |
| 05 | -3.222 | -3.222 | -2.232 | 1.338 |
| 06 | -3.222 | -2.609 | 1.347 | -3.222 |
| 07 | -2.232 | 0.525 | -0.164 | 0.303 |
| 08 | -0.738 | -0.017 | 0.198 | 0.278 |
| 09 | 0.846 | -1.959 | -0.052 | -0.547 |