Model info
| Transcription factor | Usf1 | ||||||||
| Model | USF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvGTCACGTGnbS | ||||||||
| Best auROC (human) | 0.998 | ||||||||
| Best auROC (mouse) | 0.987 | ||||||||
| Peak sets in benchmark (human) | 59 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 461 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | USF factors {1.2.6.2} | ||||||||
| MGI | MGI:99542 | ||||||||
| EntrezGene | GeneID:22278 (SSTAR profile) | ||||||||
| UniProt ID | USF1_MOUSE | ||||||||
| UniProt AC | Q61069 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Usf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 62.0 | 115.0 | 225.0 | 58.0 |
| 02 | 106.0 | 86.0 | 207.0 | 61.0 |
| 03 | 53.0 | 1.0 | 406.0 | 0.0 |
| 04 | 1.0 | 7.0 | 3.0 | 449.0 |
| 05 | 0.0 | 460.0 | 0.0 | 0.0 |
| 06 | 460.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 453.0 | 2.0 | 5.0 |
| 08 | 54.0 | 5.0 | 401.0 | 0.0 |
| 09 | 1.0 | 1.0 | 0.0 | 458.0 |
| 10 | 0.0 | 0.0 | 460.0 | 0.0 |
| 11 | 174.0 | 78.0 | 174.0 | 34.0 |
| 12 | 23.0 | 231.0 | 110.0 | 96.0 |
| 13 | 31.0 | 255.0 | 132.0 | 42.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.607 | 0.0 | 0.665 | -0.672 |
| 02 | -0.08 | -0.286 | 0.582 | -0.622 |
| 03 | -0.759 | -3.829 | 1.252 | -4.331 |
| 04 | -3.829 | -2.614 | -3.247 | 1.352 |
| 05 | -4.331 | 1.376 | -4.331 | -4.331 |
| 06 | 1.376 | -4.331 | -4.331 | -4.331 |
| 07 | -4.331 | 1.361 | -3.496 | -2.881 |
| 08 | -0.741 | -2.881 | 1.24 | -4.331 |
| 09 | -3.829 | -3.829 | -4.331 | 1.372 |
| 10 | -4.331 | -4.331 | 1.376 | -4.331 |
| 11 | 0.41 | -0.382 | 0.41 | -1.188 |
| 12 | -1.558 | 0.691 | -0.044 | -0.178 |
| 13 | -1.276 | 0.789 | 0.136 | -0.985 |