Model info
| Transcription factor | VSX2 (GeneCards) | ||||||||
| Model | VSX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTAATTAGCYdn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.996 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 504 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | VSX {3.1.3.28} | ||||||||
| HGNC | HGNC:1975 | ||||||||
| EntrezGene | GeneID:338917 (SSTAR profile) | ||||||||
| UniProt ID | VSX2_HUMAN | ||||||||
| UniProt AC | P58304 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | VSX2 expression | ||||||||
| ReMap ChIP-seq dataset list | VSX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 60.0 | 194.0 | 41.0 | 205.0 |
| 02 | 7.0 | 2.0 | 2.0 | 489.0 |
| 03 | 489.0 | 5.0 | 4.0 | 2.0 |
| 04 | 498.0 | 2.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 2.0 | 498.0 |
| 06 | 0.0 | 1.0 | 0.0 | 499.0 |
| 07 | 496.0 | 0.0 | 4.0 | 0.0 |
| 08 | 7.0 | 4.0 | 489.0 | 0.0 |
| 09 | 0.0 | 497.0 | 1.0 | 2.0 |
| 10 | 16.0 | 181.0 | 1.0 | 302.0 |
| 11 | 108.0 | 74.0 | 80.0 | 238.0 |
| 12 | 159.0 | 170.0 | 95.0 | 76.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.721 | 0.435 | -1.09 | 0.49 |
| 02 | -2.694 | -3.573 | -3.573 | 1.355 |
| 03 | 1.355 | -2.961 | -3.126 | -3.573 |
| 04 | 1.373 | -3.573 | -4.4 | -4.4 |
| 05 | -4.4 | -4.4 | -3.573 | 1.373 |
| 06 | -4.4 | -3.903 | -4.4 | 1.375 |
| 07 | 1.369 | -4.4 | -3.126 | -4.4 |
| 08 | -2.694 | -3.126 | 1.355 | -4.4 |
| 09 | -4.4 | 1.371 | -3.903 | -3.573 |
| 10 | -1.975 | 0.366 | -3.903 | 0.875 |
| 11 | -0.144 | -0.516 | -0.439 | 0.638 |
| 12 | 0.238 | 0.304 | -0.271 | -0.49 |