Transcription factor | Zic3 | ||||||||
Model | ZIC3_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nndShbhCCTGCTGdGhn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.953 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 5 | ||||||||
Aligned words | 226 | ||||||||
TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
TF subfamily | GLI-like factors {2.3.3.1} | ||||||||
MGI | MGI:106676 | ||||||||
EntrezGene | GeneID:22773 (SSTAR profile) | ||||||||
UniProt ID | ZIC3_MOUSE | ||||||||
UniProt AC | Q62521 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Zic3 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 5.0 | 23.0 | 13.0 | 8.0 | 20.0 | 23.0 | 0.0 | 11.0 | 9.0 | 9.0 | 13.0 | 6.0 | 0.0 | 5.0 | 19.0 | 3.0 |
02 | 4.0 | 3.0 | 25.0 | 2.0 | 14.0 | 9.0 | 9.0 | 28.0 | 12.0 | 8.0 | 16.0 | 9.0 | 1.0 | 5.0 | 21.0 | 1.0 |
03 | 3.0 | 8.0 | 17.0 | 3.0 | 10.0 | 7.0 | 3.0 | 5.0 | 7.0 | 20.0 | 42.0 | 2.0 | 2.0 | 5.0 | 33.0 | 0.0 |
04 | 1.0 | 14.0 | 4.0 | 3.0 | 13.0 | 16.0 | 2.0 | 9.0 | 18.0 | 52.0 | 10.0 | 15.0 | 1.0 | 4.0 | 4.0 | 1.0 |
05 | 2.0 | 23.0 | 6.0 | 2.0 | 4.0 | 31.0 | 5.0 | 46.0 | 6.0 | 6.0 | 3.0 | 5.0 | 0.0 | 14.0 | 10.0 | 4.0 |
06 | 3.0 | 6.0 | 1.0 | 2.0 | 14.0 | 30.0 | 4.0 | 26.0 | 0.0 | 9.0 | 2.0 | 13.0 | 15.0 | 21.0 | 9.0 | 12.0 |
07 | 0.0 | 32.0 | 0.0 | 0.0 | 0.0 | 65.0 | 1.0 | 0.0 | 0.0 | 16.0 | 0.0 | 0.0 | 0.0 | 53.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 11.0 | 152.0 | 0.0 | 3.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
09 | 1.0 | 2.0 | 0.0 | 8.0 | 9.0 | 24.0 | 0.0 | 120.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 1.0 |
10 | 0.0 | 1.0 | 9.0 | 0.0 | 4.0 | 2.0 | 20.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 9.0 | 117.0 | 0.0 |
11 | 0.0 | 6.0 | 1.0 | 0.0 | 0.0 | 12.0 | 0.0 | 0.0 | 0.0 | 135.0 | 11.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
12 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 1.0 | 2.0 | 148.0 | 4.0 | 0.0 | 2.0 | 6.0 | 0.0 | 0.0 | 0.0 | 0.0 |
13 | 0.0 | 1.0 | 7.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 1.0 | 2.0 | 151.0 | 0.0 |
14 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 2.0 | 53.0 | 7.0 | 31.0 | 72.0 | 0.0 | 0.0 | 0.0 | 0.0 |
15 | 0.0 | 2.0 | 52.0 | 1.0 | 1.0 | 1.0 | 3.0 | 2.0 | 0.0 | 2.0 | 28.0 | 1.0 | 0.0 | 3.0 | 65.0 | 6.0 |
16 | 0.0 | 1.0 | 0.0 | 0.0 | 3.0 | 1.0 | 0.0 | 4.0 | 61.0 | 38.0 | 23.0 | 26.0 | 2.0 | 3.0 | 0.0 | 5.0 |
17 | 13.0 | 8.0 | 39.0 | 6.0 | 12.0 | 9.0 | 3.0 | 19.0 | 1.0 | 10.0 | 3.0 | 9.0 | 5.0 | 8.0 | 15.0 | 7.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.704 | 0.774 | 0.214 | -0.257 | 0.636 | 0.774 | -3.515 | 0.051 | -0.143 | -0.143 | 0.214 | -0.532 | -3.515 | -0.704 | 0.586 | -1.176 |
02 | -0.912 | -1.176 | 0.856 | -1.534 | 0.286 | -0.143 | -0.143 | 0.968 | 0.136 | -0.257 | 0.417 | -0.143 | -2.098 | -0.704 | 0.684 | -2.098 |
03 | -1.176 | -0.257 | 0.476 | -1.176 | -0.042 | -0.385 | -1.176 | -0.704 | -0.385 | 0.636 | 1.37 | -1.534 | -1.534 | -0.704 | 1.131 | -3.515 |
04 | -2.098 | 0.286 | -0.912 | -1.176 | 0.214 | 0.417 | -1.534 | -0.143 | 0.532 | 1.582 | -0.042 | 0.354 | -2.098 | -0.912 | -0.912 | -2.098 |
05 | -1.534 | 0.774 | -0.532 | -1.534 | -0.912 | 1.069 | -0.704 | 1.46 | -0.532 | -0.532 | -1.176 | -0.704 | -3.515 | 0.286 | -0.042 | -0.912 |
06 | -1.176 | -0.532 | -2.098 | -1.534 | 0.286 | 1.036 | -0.912 | 0.895 | -3.515 | -0.143 | -1.534 | 0.214 | 0.354 | 0.684 | -0.143 | 0.136 |
07 | -3.515 | 1.1 | -3.515 | -3.515 | -3.515 | 1.804 | -2.098 | -3.515 | -3.515 | 0.417 | -3.515 | -3.515 | -3.515 | 1.601 | -3.515 | -3.515 |
08 | -3.515 | -3.515 | -3.515 | -3.515 | 0.051 | 2.65 | -3.515 | -1.176 | -3.515 | -2.098 | -3.515 | -3.515 | -3.515 | -3.515 | -3.515 | -3.515 |
09 | -2.098 | -1.534 | -3.515 | -0.257 | -0.143 | 0.816 | -3.515 | 2.415 | -3.515 | -3.515 | -3.515 | -3.515 | -3.515 | -1.534 | -3.515 | -2.098 |
10 | -3.515 | -2.098 | -0.143 | -3.515 | -0.912 | -1.534 | 0.636 | -1.534 | -3.515 | -3.515 | -3.515 | -3.515 | -1.176 | -0.143 | 2.389 | -3.515 |
11 | -3.515 | -0.532 | -2.098 | -3.515 | -3.515 | 0.136 | -3.515 | -3.515 | -3.515 | 2.532 | 0.051 | -3.515 | -3.515 | -1.534 | -3.515 | -3.515 |
12 | -3.515 | -3.515 | -3.515 | -3.515 | -0.912 | -2.098 | -1.534 | 2.624 | -0.912 | -3.515 | -1.534 | -0.532 | -3.515 | -3.515 | -3.515 | -3.515 |
13 | -3.515 | -2.098 | -0.385 | -3.515 | -3.515 | -3.515 | -2.098 | -3.515 | -3.515 | -3.515 | -0.912 | -3.515 | -2.098 | -1.534 | 2.644 | -3.515 |
14 | -2.098 | -3.515 | -3.515 | -3.515 | -2.098 | -3.515 | -3.515 | -1.534 | 1.601 | -0.385 | 1.069 | 1.906 | -3.515 | -3.515 | -3.515 | -3.515 |
15 | -3.515 | -1.534 | 1.582 | -2.098 | -2.098 | -2.098 | -1.176 | -1.534 | -3.515 | -1.534 | 0.968 | -2.098 | -3.515 | -1.176 | 1.804 | -0.532 |
16 | -3.515 | -2.098 | -3.515 | -3.515 | -1.176 | -2.098 | -3.515 | -0.912 | 1.741 | 1.27 | 0.774 | 0.895 | -1.534 | -1.176 | -3.515 | -0.704 |
17 | 0.214 | -0.257 | 1.296 | -0.532 | 0.136 | -0.143 | -1.176 | 0.586 | -2.098 | -0.042 | -1.176 | -0.143 | -0.704 | -0.257 | 0.354 | -0.385 |