Model info
| Transcription factor | ZKSCAN3 (GeneCards) | ||||||||
| Model | ZKSC3_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbYRAGGYTAd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 138 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZKSCAN3-like factors {2.3.3.26} | ||||||||
| HGNC | HGNC:13853 | ||||||||
| EntrezGene | GeneID:80317 (SSTAR profile) | ||||||||
| UniProt ID | ZKSC3_HUMAN | ||||||||
| UniProt AC | Q9BRR0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ZKSCAN3 expression | ||||||||
| ReMap ChIP-seq dataset list | ZKSCAN3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 13.5 | 16.5 | 33.5 | 74.5 |
| 02 | 10.5 | 45.5 | 16.5 | 65.5 |
| 03 | 10.25 | 94.25 | 9.25 | 24.25 |
| 04 | 14.25 | 8.25 | 106.25 | 9.25 |
| 05 | 125.0 | 2.0 | 7.0 | 4.0 |
| 06 | 1.0 | 3.0 | 128.0 | 6.0 |
| 07 | 1.0 | 0.0 | 136.0 | 1.0 |
| 08 | 5.25 | 91.25 | 3.25 | 38.25 |
| 09 | 5.5 | 4.5 | 1.5 | 126.5 |
| 10 | 122.0 | 3.0 | 9.0 | 4.0 |
| 11 | 26.75 | 21.75 | 60.75 | 28.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.886 | -0.701 | -0.028 | 0.751 |
| 02 | -1.114 | 0.268 | -0.701 | 0.625 |
| 03 | -1.135 | 0.983 | -1.226 | -0.338 |
| 04 | -0.836 | -1.327 | 1.101 | -1.226 |
| 05 | 1.262 | -2.403 | -1.468 | -1.921 |
| 06 | -2.773 | -2.133 | 1.286 | -1.598 |
| 07 | -2.773 | -3.368 | 1.346 | -2.773 |
| 08 | -1.707 | 0.951 | -2.076 | 0.1 |
| 09 | -1.669 | -1.83 | -2.571 | 1.274 |
| 10 | 1.238 | -2.133 | -1.251 | -1.921 |
| 11 | -0.244 | -0.441 | 0.551 | -0.175 |