Model info
| Transcription factor | Znf281 | ||||||||
| Model | ZN281_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RvRKKGGGGGAGGGG | ||||||||
| Best auROC (human) | 0.938 | ||||||||
| Best auROC (mouse) | 0.999 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | ZNF148-like factors {2.3.3.13} | ||||||||
| MGI | MGI:3029290 | ||||||||
| EntrezGene | GeneID:226442 (SSTAR profile) | ||||||||
| UniProt ID | ZN281_MOUSE | ||||||||
| UniProt AC | Q99LI5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Znf281 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 83.0 | 79.0 | 298.0 | 40.0 |
| 02 | 71.0 | 80.0 | 300.0 | 49.0 |
| 03 | 68.0 | 53.0 | 337.0 | 42.0 |
| 04 | 66.0 | 34.0 | 308.0 | 92.0 |
| 05 | 54.0 | 14.0 | 118.0 | 314.0 |
| 06 | 0.0 | 0.0 | 500.0 | 0.0 |
| 07 | 4.0 | 0.0 | 496.0 | 0.0 |
| 08 | 6.0 | 0.0 | 494.0 | 0.0 |
| 09 | 0.0 | 0.0 | 500.0 | 0.0 |
| 10 | 0.0 | 0.0 | 500.0 | 0.0 |
| 11 | 396.0 | 19.0 | 2.0 | 83.0 |
| 12 | 25.0 | 0.0 | 433.0 | 42.0 |
| 13 | 1.0 | 0.0 | 499.0 | 0.0 |
| 14 | 2.0 | 0.0 | 493.0 | 5.0 |
| 15 | 9.0 | 3.0 | 479.0 | 9.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.403 | -0.452 | 0.862 | -1.114 |
| 02 | -0.556 | -0.439 | 0.868 | -0.918 |
| 03 | -0.599 | -0.841 | 0.984 | -1.067 |
| 04 | -0.628 | -1.27 | 0.894 | -0.302 |
| 05 | -0.823 | -2.096 | -0.057 | 0.914 |
| 06 | -4.4 | -4.4 | 1.377 | -4.4 |
| 07 | -3.126 | -4.4 | 1.369 | -4.4 |
| 08 | -2.819 | -4.4 | 1.365 | -4.4 |
| 09 | -4.4 | -4.4 | 1.377 | -4.4 |
| 10 | -4.4 | -4.4 | 1.377 | -4.4 |
| 11 | 1.145 | -1.818 | -3.573 | -0.403 |
| 12 | -1.561 | -4.4 | 1.234 | -1.067 |
| 13 | -3.903 | -4.4 | 1.375 | -4.4 |
| 14 | -3.573 | -4.4 | 1.363 | -2.961 |
| 15 | -2.484 | -3.325 | 1.334 | -2.484 |