Transcription factor | Ar | ||||||||
Model | ANDR_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nRGdACWbTbTGTbCYbn | ||||||||
Best auROC (human) | 0.976 | ||||||||
Best auROC (mouse) | 0.995 | ||||||||
Peak sets in benchmark (human) | 461 | ||||||||
Peak sets in benchmark (mouse) | 57 | ||||||||
Aligned words | 512 | ||||||||
TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
MGI | MGI:88064 | ||||||||
EntrezGene | GeneID:11835 (SSTAR profile) | ||||||||
UniProt ID | ANDR_MOUSE | ||||||||
UniProt AC | P19091 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Ar expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 68.0 | 3.0 | 98.0 | 4.0 | 91.0 | 7.0 | 11.0 | 9.0 | 52.0 | 3.0 | 69.0 | 8.0 | 18.0 | 0.0 | 53.0 | 6.0 |
02 | 14.0 | 2.0 | 209.0 | 4.0 | 4.0 | 1.0 | 8.0 | 0.0 | 12.0 | 1.0 | 207.0 | 11.0 | 0.0 | 1.0 | 24.0 | 2.0 |
03 | 10.0 | 7.0 | 8.0 | 5.0 | 1.0 | 0.0 | 0.0 | 4.0 | 194.0 | 58.0 | 103.0 | 93.0 | 6.0 | 3.0 | 4.0 | 4.0 |
04 | 182.0 | 9.0 | 10.0 | 10.0 | 55.0 | 6.0 | 0.0 | 7.0 | 97.0 | 11.0 | 2.0 | 5.0 | 86.0 | 6.0 | 6.0 | 8.0 |
05 | 5.0 | 386.0 | 20.0 | 9.0 | 2.0 | 25.0 | 2.0 | 3.0 | 0.0 | 17.0 | 1.0 | 0.0 | 0.0 | 26.0 | 2.0 | 2.0 |
06 | 4.0 | 1.0 | 2.0 | 0.0 | 338.0 | 17.0 | 29.0 | 70.0 | 7.0 | 3.0 | 11.0 | 4.0 | 2.0 | 3.0 | 2.0 | 7.0 |
07 | 18.0 | 127.0 | 104.0 | 102.0 | 3.0 | 10.0 | 0.0 | 11.0 | 5.0 | 18.0 | 7.0 | 14.0 | 5.0 | 29.0 | 24.0 | 23.0 |
08 | 0.0 | 18.0 | 0.0 | 13.0 | 0.0 | 68.0 | 0.0 | 116.0 | 0.0 | 57.0 | 0.0 | 78.0 | 0.0 | 58.0 | 0.0 | 92.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 47.0 | 72.0 | 41.0 | 41.0 | 0.0 | 0.0 | 0.0 | 0.0 | 21.0 | 106.0 | 125.0 | 47.0 |
10 | 5.0 | 8.0 | 2.0 | 53.0 | 21.0 | 13.0 | 0.0 | 144.0 | 11.0 | 9.0 | 5.0 | 141.0 | 4.0 | 7.0 | 2.0 | 75.0 |
11 | 0.0 | 0.0 | 41.0 | 0.0 | 3.0 | 3.0 | 30.0 | 1.0 | 0.0 | 0.0 | 9.0 | 0.0 | 4.0 | 2.0 | 406.0 | 1.0 |
12 | 0.0 | 0.0 | 0.0 | 7.0 | 0.0 | 1.0 | 0.0 | 4.0 | 22.0 | 8.0 | 9.0 | 447.0 | 0.0 | 0.0 | 0.0 | 2.0 |
13 | 5.0 | 5.0 | 4.0 | 8.0 | 1.0 | 3.0 | 0.0 | 5.0 | 1.0 | 4.0 | 1.0 | 3.0 | 62.0 | 110.0 | 66.0 | 222.0 |
14 | 4.0 | 61.0 | 0.0 | 4.0 | 2.0 | 110.0 | 1.0 | 9.0 | 8.0 | 59.0 | 0.0 | 4.0 | 1.0 | 226.0 | 0.0 | 11.0 |
15 | 0.0 | 12.0 | 1.0 | 2.0 | 34.0 | 217.0 | 2.0 | 203.0 | 0.0 | 0.0 | 0.0 | 1.0 | 4.0 | 19.0 | 1.0 | 4.0 |
16 | 3.0 | 11.0 | 15.0 | 9.0 | 38.0 | 89.0 | 11.0 | 110.0 | 0.0 | 0.0 | 3.0 | 1.0 | 23.0 | 66.0 | 50.0 | 71.0 |
17 | 10.0 | 7.0 | 32.0 | 15.0 | 75.0 | 18.0 | 12.0 | 61.0 | 19.0 | 19.0 | 16.0 | 25.0 | 22.0 | 42.0 | 69.0 | 58.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.771 | -2.234 | 1.135 | -1.975 | 1.061 | -1.454 | -1.022 | -1.215 | 0.504 | -2.234 | 0.785 | -1.328 | -0.543 | -4.4 | 0.523 | -1.6 |
02 | -0.788 | -2.584 | 1.89 | -1.975 | -1.975 | -3.126 | -1.328 | -4.4 | -0.938 | -3.126 | 1.88 | -1.022 | -4.4 | -3.126 | -0.26 | -2.584 |
03 | -1.114 | -1.454 | -1.328 | -1.77 | -3.126 | -4.4 | -4.4 | -1.975 | 1.815 | 0.613 | 1.184 | 1.082 | -1.6 | -2.234 | -1.975 | -1.975 |
04 | 1.752 | -1.215 | -1.114 | -1.114 | 0.56 | -1.6 | -4.4 | -1.454 | 1.124 | -1.022 | -2.584 | -1.77 | 1.004 | -1.6 | -1.6 | -1.328 |
05 | -1.77 | 2.502 | -0.439 | -1.215 | -2.584 | -0.22 | -2.584 | -2.234 | -4.4 | -0.599 | -3.126 | -4.4 | -4.4 | -0.181 | -2.584 | -2.584 |
06 | -1.975 | -3.126 | -2.584 | -4.4 | 2.37 | -0.599 | -0.074 | 0.8 | -1.454 | -2.234 | -1.022 | -1.975 | -2.584 | -2.234 | -2.584 | -1.454 |
07 | -0.543 | 1.393 | 1.194 | 1.174 | -2.234 | -1.114 | -4.4 | -1.022 | -1.77 | -0.543 | -1.454 | -0.788 | -1.77 | -0.074 | -0.26 | -0.302 |
08 | -4.4 | -0.543 | -4.4 | -0.86 | -4.4 | 0.771 | -4.4 | 1.303 | -4.4 | 0.595 | -4.4 | 0.907 | -4.4 | 0.613 | -4.4 | 1.072 |
09 | -4.4 | -4.4 | -4.4 | -4.4 | 0.404 | 0.828 | 0.269 | 0.269 | -4.4 | -4.4 | -4.4 | -4.4 | -0.392 | 1.213 | 1.377 | 0.404 |
10 | -1.77 | -1.328 | -2.584 | 0.523 | -0.392 | -0.86 | -4.4 | 1.518 | -1.022 | -1.215 | -1.77 | 1.497 | -1.975 | -1.454 | -2.584 | 0.868 |
11 | -4.4 | -4.4 | 0.269 | -4.4 | -2.234 | -2.234 | -0.04 | -3.126 | -4.4 | -4.4 | -1.215 | -4.4 | -1.975 | -2.584 | 2.553 | -3.126 |
12 | -4.4 | -4.4 | -4.4 | -1.454 | -4.4 | -3.126 | -4.4 | -1.975 | -0.346 | -1.328 | -1.215 | 2.649 | -4.4 | -4.4 | -4.4 | -2.584 |
13 | -1.77 | -1.77 | -1.975 | -1.328 | -3.126 | -2.234 | -4.4 | -1.77 | -3.126 | -1.975 | -3.126 | -2.234 | 0.679 | 1.25 | 0.741 | 1.95 |
14 | -1.975 | 0.663 | -4.4 | -1.975 | -2.584 | 1.25 | -3.126 | -1.215 | -1.328 | 0.63 | -4.4 | -1.975 | -3.126 | 1.968 | -4.4 | -1.022 |
15 | -4.4 | -0.938 | -3.126 | -2.584 | 0.083 | 1.927 | -2.584 | 1.861 | -4.4 | -4.4 | -4.4 | -3.126 | -1.975 | -0.49 | -3.126 | -1.975 |
16 | -2.234 | -1.022 | -0.721 | -1.215 | 0.193 | 1.039 | -1.022 | 1.25 | -4.4 | -4.4 | -2.234 | -3.126 | -0.302 | 0.741 | 0.465 | 0.814 |
17 | -1.114 | -1.454 | 0.023 | -0.721 | 0.868 | -0.543 | -0.938 | 0.663 | -0.49 | -0.49 | -0.658 | -0.22 | -0.346 | 0.293 | 0.785 | 0.613 |