Model info
| Transcription factor | GABPA (GeneCards) | ||||||||
| Model | GABPA_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvnvSCGGAAGYvv | ||||||||
| Best auROC (human) | 0.988 | ||||||||
| Best auROC (mouse) | 0.949 | ||||||||
| Peak sets in benchmark (human) | 92 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Ets-like factors {3.5.2.1} | ||||||||
| HGNC | HGNC:4071 | ||||||||
| EntrezGene | GeneID:2551 (SSTAR profile) | ||||||||
| UniProt ID | GABPA_HUMAN | ||||||||
| UniProt AC | Q06546 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GABPA expression | ||||||||
| ReMap ChIP-seq dataset list | GABPA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 91.0 | 113.0 | 242.0 | 54.0 |
| 02 | 143.0 | 126.0 | 193.0 | 38.0 |
| 03 | 182.0 | 115.0 | 135.0 | 68.0 |
| 04 | 215.0 | 73.0 | 192.0 | 20.0 |
| 05 | 49.0 | 306.0 | 135.0 | 10.0 |
| 06 | 56.0 | 428.0 | 13.0 | 3.0 |
| 07 | 4.0 | 0.0 | 496.0 | 0.0 |
| 08 | 4.0 | 2.0 | 493.0 | 1.0 |
| 09 | 498.0 | 0.0 | 2.0 | 0.0 |
| 10 | 493.0 | 1.0 | 0.0 | 6.0 |
| 11 | 53.0 | 12.0 | 434.0 | 1.0 |
| 12 | 49.0 | 94.0 | 16.0 | 341.0 |
| 13 | 89.0 | 65.0 | 285.0 | 61.0 |
| 14 | 144.0 | 135.0 | 192.0 | 29.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.313 | -0.1 | 0.655 | -0.823 |
| 02 | 0.133 | 0.008 | 0.43 | -1.163 |
| 03 | 0.372 | -0.082 | 0.076 | -0.599 |
| 04 | 0.537 | -0.529 | 0.425 | -1.77 |
| 05 | -0.918 | 0.888 | 0.076 | -2.394 |
| 06 | -0.788 | 1.222 | -2.163 | -3.325 |
| 07 | -3.126 | -4.4 | 1.369 | -4.4 |
| 08 | -3.126 | -3.573 | 1.363 | -3.903 |
| 09 | 1.373 | -4.4 | -3.573 | -4.4 |
| 10 | 1.363 | -3.903 | -4.4 | -2.819 |
| 11 | -0.841 | -2.234 | 1.236 | -3.903 |
| 12 | -0.918 | -0.281 | -1.975 | 0.996 |
| 13 | -0.335 | -0.643 | 0.817 | -0.705 |
| 14 | 0.14 | 0.076 | 0.425 | -1.421 |