Model info
| Transcription factor | GRHL2 (GeneCards) | ||||||||
| Model | GRHL2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RWCYdGTYbddC | ||||||||
| Best auROC (human) | 0.96 | ||||||||
| Best auROC (mouse) | 0.921 | ||||||||
| Peak sets in benchmark (human) | 22 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 497 | ||||||||
| TF family | Grainyhead-related factors {6.7.1} | ||||||||
| TF subfamily | GRH-like proteins {6.7.1.1} | ||||||||
| HGNC | HGNC:2799 | ||||||||
| EntrezGene | GeneID:79977 (SSTAR profile) | ||||||||
| UniProt ID | GRHL2_HUMAN | ||||||||
| UniProt AC | Q6ISB3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | GRHL2 expression | ||||||||
| ReMap ChIP-seq dataset list | GRHL2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 368.0 | 14.0 | 64.0 | 51.0 |
| 02 | 387.0 | 8.0 | 44.0 | 58.0 |
| 03 | 0.0 | 496.0 | 1.0 | 0.0 |
| 04 | 22.0 | 355.0 | 4.0 | 116.0 |
| 05 | 112.0 | 17.0 | 153.0 | 215.0 |
| 06 | 2.0 | 1.0 | 494.0 | 0.0 |
| 07 | 12.0 | 126.0 | 2.0 | 357.0 |
| 08 | 7.0 | 192.0 | 5.0 | 293.0 |
| 09 | 61.0 | 119.0 | 71.0 | 246.0 |
| 10 | 88.0 | 28.0 | 230.0 | 151.0 |
| 11 | 174.0 | 32.0 | 167.0 | 124.0 |
| 12 | 1.0 | 454.0 | 14.0 | 28.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.078 | -2.091 | -0.652 | -0.873 |
| 02 | 1.128 | -2.578 | -1.016 | -0.748 |
| 03 | -4.395 | 1.375 | -3.898 | -4.395 |
| 04 | -1.675 | 1.042 | -3.121 | -0.068 |
| 05 | -0.102 | -1.914 | 0.206 | 0.543 |
| 06 | -3.567 | -3.898 | 1.371 | -4.395 |
| 07 | -2.228 | 0.014 | -3.567 | 1.047 |
| 08 | -2.689 | 0.431 | -2.955 | 0.851 |
| 09 | -0.699 | -0.043 | -0.55 | 0.677 |
| 10 | -0.34 | -1.449 | 0.61 | 0.193 |
| 11 | 0.333 | -1.322 | 0.293 | -0.002 |
| 12 | -3.898 | 1.287 | -2.091 | -1.449 |