Model info
| Transcription factor | HOXB13 (GeneCards) | ||||||||
| Model | HXB13_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YTTTATdRvn | ||||||||
| Best auROC (human) | 0.846 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | HOX9-13 {3.1.1.8} | ||||||||
| HGNC | HGNC:5112 | ||||||||
| EntrezGene | GeneID:10481 (SSTAR profile) | ||||||||
| UniProt ID | HXB13_HUMAN | ||||||||
| UniProt AC | Q92826 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | HOXB13 expression | ||||||||
| ReMap ChIP-seq dataset list | HOXB13 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 34.0 | 54.0 | 50.0 | 362.0 |
| 02 | 5.0 | 3.0 | 9.0 | 483.0 |
| 03 | 0.0 | 2.0 | 1.0 | 497.0 |
| 04 | 7.0 | 12.0 | 13.0 | 468.0 |
| 05 | 472.0 | 11.0 | 17.0 | 0.0 |
| 06 | 12.0 | 50.0 | 1.0 | 437.0 |
| 07 | 131.0 | 5.0 | 162.0 | 202.0 |
| 08 | 125.0 | 4.0 | 328.0 | 43.0 |
| 09 | 51.0 | 165.0 | 250.0 | 34.0 |
| 10 | 96.0 | 192.0 | 84.0 | 128.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.27 | -0.823 | -0.898 | 1.055 |
| 02 | -2.961 | -3.325 | -2.484 | 1.343 |
| 03 | -4.4 | -3.573 | -3.903 | 1.371 |
| 04 | -2.694 | -2.234 | -2.163 | 1.311 |
| 05 | 1.32 | -2.311 | -1.92 | -4.4 |
| 06 | -2.234 | -0.898 | -3.903 | 1.243 |
| 07 | 0.046 | -2.961 | 0.256 | 0.475 |
| 08 | 0.0 | -3.126 | 0.957 | -1.044 |
| 09 | -0.879 | 0.275 | 0.687 | -1.27 |
| 10 | -0.26 | 0.425 | -0.392 | 0.023 |