Model info
| Transcription factor | MEF2A (GeneCards) | ||||||||
| Model | MEF2A_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddYTATTTWWRRh | ||||||||
| Best auROC (human) | 0.946 | ||||||||
| Best auROC (mouse) | 0.973 | ||||||||
| Peak sets in benchmark (human) | 15 | ||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Regulators of differentiation {5.1.1} | ||||||||
| TF subfamily | MEF-2 {5.1.1.1} | ||||||||
| HGNC | HGNC:6993 | ||||||||
| EntrezGene | GeneID:4205 (SSTAR profile) | ||||||||
| UniProt ID | MEF2A_HUMAN | ||||||||
| UniProt AC | Q02078 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MEF2A expression | ||||||||
| ReMap ChIP-seq dataset list | MEF2A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 137.0 | 39.0 | 122.0 | 202.0 |
| 02 | 64.0 | 40.0 | 194.0 | 202.0 |
| 03 | 14.0 | 362.0 | 25.0 | 99.0 |
| 04 | 1.0 | 28.0 | 0.0 | 471.0 |
| 05 | 464.0 | 3.0 | 4.0 | 29.0 |
| 06 | 32.0 | 1.0 | 4.0 | 463.0 |
| 07 | 51.0 | 1.0 | 2.0 | 446.0 |
| 08 | 7.0 | 24.0 | 5.0 | 464.0 |
| 09 | 67.0 | 41.0 | 6.0 | 386.0 |
| 10 | 70.0 | 18.0 | 58.0 | 354.0 |
| 11 | 275.0 | 1.0 | 218.0 | 6.0 |
| 12 | 80.0 | 19.0 | 329.0 | 72.0 |
| 13 | 180.0 | 192.0 | 52.0 | 76.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.091 | -1.138 | -0.024 | 0.475 |
| 02 | -0.658 | -1.114 | 0.435 | 0.475 |
| 03 | -2.096 | 1.055 | -1.561 | -0.23 |
| 04 | -3.903 | -1.454 | -4.4 | 1.317 |
| 05 | 1.303 | -3.325 | -3.126 | -1.421 |
| 06 | -1.328 | -3.903 | -3.126 | 1.3 |
| 07 | -0.879 | -3.903 | -3.573 | 1.263 |
| 08 | -2.694 | -1.6 | -2.961 | 1.303 |
| 09 | -0.613 | -1.09 | -2.819 | 1.119 |
| 10 | -0.57 | -1.868 | -0.754 | 1.033 |
| 11 | 0.782 | -3.903 | 0.551 | -2.819 |
| 12 | -0.439 | -1.818 | 0.96 | -0.543 |
| 13 | 0.361 | 0.425 | -0.86 | -0.49 |