Model info
| Transcription factor | MYCN (GeneCards) | ||||||||
| Model | MYCN_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRvCACGTGbdv | ||||||||
| Best auROC (human) | 0.919 | ||||||||
| Best auROC (mouse) | 0.899 | ||||||||
| Peak sets in benchmark (human) | 32 | ||||||||
| Peak sets in benchmark (mouse) | 10 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | Myc / Max factors {1.2.6.5} | ||||||||
| HGNC | HGNC:7559 | ||||||||
| EntrezGene | GeneID:4613 (SSTAR profile) | ||||||||
| UniProt ID | MYCN_HUMAN | ||||||||
| UniProt AC | P04198 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MYCN expression | ||||||||
| ReMap ChIP-seq dataset list | MYCN datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 146.0 | 85.0 | 227.0 | 41.0 |
| 02 | 132.0 | 24.0 | 314.0 | 29.0 |
| 03 | 80.0 | 282.0 | 78.0 | 59.0 |
| 04 | 12.0 | 485.0 | 0.0 | 2.0 |
| 05 | 426.0 | 3.0 | 41.0 | 29.0 |
| 06 | 3.0 | 448.0 | 2.0 | 46.0 |
| 07 | 40.0 | 6.0 | 448.0 | 5.0 |
| 08 | 44.0 | 38.0 | 1.0 | 416.0 |
| 09 | 1.0 | 0.0 | 486.0 | 12.0 |
| 10 | 32.0 | 142.0 | 267.0 | 58.0 |
| 11 | 109.0 | 60.0 | 203.0 | 127.0 |
| 12 | 97.0 | 204.0 | 163.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.156 | -0.378 | 0.593 | -1.088 |
| 02 | 0.056 | -1.598 | 0.916 | -1.419 |
| 03 | -0.437 | 0.809 | -0.462 | -0.735 |
| 04 | -2.232 | 1.349 | -4.398 | -3.571 |
| 05 | 1.219 | -3.323 | -1.088 | -1.419 |
| 06 | -3.323 | 1.27 | -3.571 | -0.977 |
| 07 | -1.112 | -2.817 | 1.27 | -2.959 |
| 08 | -1.02 | -1.161 | -3.901 | 1.196 |
| 09 | -3.901 | -4.398 | 1.351 | -2.232 |
| 10 | -1.326 | 0.128 | 0.754 | -0.752 |
| 11 | -0.133 | -0.719 | 0.482 | 0.018 |
| 12 | -0.248 | 0.487 | 0.265 | -1.24 |