Model info
| Transcription factor | NKX2-1 (GeneCards) | ||||||||
| Model | NKX21_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bWKGAGWGbh | ||||||||
| Best auROC (human) | 0.92 | ||||||||
| Best auROC (mouse) | 0.917 | ||||||||
| Peak sets in benchmark (human) | 14 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-2.1 {3.1.2.14} | ||||||||
| HGNC | HGNC:11825 | ||||||||
| EntrezGene | GeneID:7080 (SSTAR profile) | ||||||||
| UniProt ID | NKX21_HUMAN | ||||||||
| UniProt AC | P43699 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NKX2-1 expression | ||||||||
| ReMap ChIP-seq dataset list | NKX2-1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 33.0 | 211.0 | 113.0 | 143.0 |
| 02 | 66.0 | 46.0 | 12.0 | 376.0 |
| 03 | 38.0 | 11.0 | 167.0 | 284.0 |
| 04 | 17.0 | 3.0 | 479.0 | 1.0 |
| 05 | 498.0 | 1.0 | 0.0 | 1.0 |
| 06 | 5.0 | 4.0 | 491.0 | 0.0 |
| 07 | 141.0 | 1.0 | 52.0 | 306.0 |
| 08 | 54.0 | 1.0 | 439.0 | 6.0 |
| 09 | 16.0 | 163.0 | 222.0 | 99.0 |
| 10 | 79.0 | 174.0 | 78.0 | 169.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.298 | 0.519 | -0.1 | 0.133 |
| 02 | -0.628 | -0.979 | -2.234 | 1.093 |
| 03 | -1.163 | -2.311 | 0.287 | 0.814 |
| 04 | -1.92 | -3.325 | 1.334 | -3.903 |
| 05 | 1.373 | -3.903 | -4.4 | -3.903 |
| 06 | -2.961 | -3.126 | 1.359 | -4.4 |
| 07 | 0.119 | -3.903 | -0.86 | 0.888 |
| 08 | -0.823 | -3.903 | 1.247 | -2.819 |
| 09 | -1.975 | 0.263 | 0.569 | -0.23 |
| 10 | -0.452 | 0.327 | -0.464 | 0.298 |