Model info
| Transcription factor | Nobox | ||||||||
| Model | NOBOX_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTAATTGvb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 66 | ||||||||
| TF family | |||||||||
| TF subfamily | |||||||||
| MGI | MGI:108011 | ||||||||
| EntrezGene | GeneID:18291 (SSTAR profile) | ||||||||
| UniProt ID | NOBOX_MOUSE | ||||||||
| UniProt AC | Q8VIH1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nobox expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 19.332 | 21.853 | 3.362 | 21.772 |
| 02 | 0.0 | 0.0 | 0.0 | 66.319 |
| 03 | 64.638 | 0.0 | 0.0 | 1.681 |
| 04 | 64.638 | 1.681 | 0.0 | 0.0 |
| 05 | 1.681 | 1.681 | 1.681 | 61.276 |
| 06 | 1.681 | 0.0 | 6.724 | 57.914 |
| 07 | 24.291 | 0.0 | 42.028 | 0.0 |
| 08 | 12.524 | 20.174 | 29.418 | 4.203 |
| 09 | 5.464 | 17.988 | 11.347 | 31.52 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.145 | 0.262 | -1.386 | 0.258 |
| 02 | -2.822 | -2.822 | -2.822 | 1.341 |
| 03 | 1.315 | -2.822 | -2.822 | -1.865 |
| 04 | 1.315 | -1.865 | -2.822 | -2.822 |
| 05 | -1.865 | -1.865 | -1.865 | 1.263 |
| 06 | -1.865 | -2.822 | -0.819 | 1.207 |
| 07 | 0.363 | -2.822 | 0.893 | -2.822 |
| 08 | -0.261 | 0.186 | 0.547 | -1.211 |
| 09 | -0.996 | 0.077 | -0.352 | 0.614 |