Model info
| Transcription factor | Pbx1 | ||||||||
| Model | PBX1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGAKTGRCRKv | ||||||||
| Best auROC (human) | 0.858 | ||||||||
| Best auROC (mouse) | 0.902 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 36 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | PBX {3.1.4.4} | ||||||||
| MGI | MGI:97495 | ||||||||
| EntrezGene | GeneID:18514 (SSTAR profile) | ||||||||
| UniProt ID | PBX1_MOUSE | ||||||||
| UniProt AC | P41778 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Pbx1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 53.0 | 22.0 | 37.0 | 388.0 |
| 02 | 6.0 | 12.0 | 479.0 | 3.0 |
| 03 | 484.0 | 2.0 | 6.0 | 8.0 |
| 04 | 10.0 | 98.0 | 140.0 | 252.0 |
| 05 | 21.0 | 11.0 | 50.0 | 418.0 |
| 06 | 9.0 | 1.0 | 471.0 | 19.0 |
| 07 | 339.0 | 4.0 | 153.0 | 4.0 |
| 08 | 2.0 | 445.0 | 5.0 | 48.0 |
| 09 | 322.0 | 8.0 | 111.0 | 59.0 |
| 10 | 38.0 | 33.0 | 385.0 | 44.0 |
| 11 | 73.0 | 170.0 | 218.0 | 39.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.841 | -1.681 | -1.189 | 1.124 |
| 02 | -2.819 | -2.234 | 1.334 | -3.325 |
| 03 | 1.345 | -3.573 | -2.819 | -2.584 |
| 04 | -2.394 | -0.24 | 0.112 | 0.695 |
| 05 | -1.725 | -2.311 | -0.898 | 1.199 |
| 06 | -2.484 | -3.903 | 1.317 | -1.818 |
| 07 | 0.99 | -3.126 | 0.2 | -3.126 |
| 08 | -3.573 | 1.261 | -2.961 | -0.938 |
| 09 | 0.939 | -2.584 | -0.117 | -0.737 |
| 10 | -1.163 | -1.298 | 1.117 | -1.022 |
| 11 | -0.529 | 0.304 | 0.551 | -1.138 |