Model info
| Transcription factor | PDX1 (GeneCards) | ||||||||
| Model | PDX1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGAYWRAKK | ||||||||
| Best auROC (human) | 0.96 | ||||||||
| Best auROC (mouse) | 0.814 | ||||||||
| Peak sets in benchmark (human) | 10 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 494 | ||||||||
| TF family | HOX-related factors {3.1.1} | ||||||||
| TF subfamily | PDX {3.1.1.15} | ||||||||
| HGNC | HGNC:6107 | ||||||||
| EntrezGene | GeneID:3651 (SSTAR profile) | ||||||||
| UniProt ID | PDX1_HUMAN | ||||||||
| UniProt AC | P52945 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PDX1 expression | ||||||||
| ReMap ChIP-seq dataset list | PDX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 95.0 | 2.0 | 15.0 | 382.0 |
| 02 | 38.0 | 13.0 | 424.0 | 19.0 |
| 03 | 471.0 | 9.0 | 2.0 | 12.0 |
| 04 | 14.0 | 74.0 | 31.0 | 375.0 |
| 05 | 89.0 | 7.0 | 72.0 | 326.0 |
| 06 | 80.0 | 32.0 | 372.0 | 10.0 |
| 07 | 441.0 | 30.0 | 17.0 | 6.0 |
| 08 | 28.0 | 32.0 | 77.0 | 357.0 |
| 09 | 34.0 | 38.0 | 278.0 | 144.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.259 | -3.562 | -2.022 | 1.121 |
| 02 | -1.151 | -2.151 | 1.225 | -1.806 |
| 03 | 1.329 | -2.473 | -3.562 | -2.222 |
| 04 | -2.085 | -0.504 | -1.346 | 1.102 |
| 05 | -0.323 | -2.683 | -0.531 | 0.963 |
| 06 | -0.427 | -1.316 | 1.094 | -2.382 |
| 07 | 1.264 | -1.377 | -1.908 | -2.807 |
| 08 | -1.443 | -1.316 | -0.465 | 1.053 |
| 09 | -1.258 | -1.151 | 0.804 | 0.152 |