Model info
| Transcription factor | PPARA (GeneCards) | ||||||||
| Model | PPARA_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hWbKRGGbbARAGGKYR | ||||||||
| Best auROC (human) | 0.576 | ||||||||
| Best auROC (mouse) | 0.956 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | PPAR (NR1C) {2.1.2.5} | ||||||||
| HGNC | HGNC:9232 | ||||||||
| EntrezGene | GeneID:5465 (SSTAR profile) | ||||||||
| UniProt ID | PPARA_HUMAN | ||||||||
| UniProt AC | Q07869 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PPARA expression | ||||||||
| ReMap ChIP-seq dataset list | PPARA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 246.0 | 108.0 | 63.0 | 83.0 |
| 02 | 267.0 | 12.0 | 44.0 | 177.0 |
| 03 | 41.0 | 211.0 | 184.0 | 64.0 |
| 04 | 31.0 | 58.0 | 76.0 | 335.0 |
| 05 | 222.0 | 15.0 | 234.0 | 29.0 |
| 06 | 47.0 | 1.0 | 419.0 | 33.0 |
| 07 | 74.0 | 6.0 | 401.0 | 19.0 |
| 08 | 61.0 | 91.0 | 194.0 | 154.0 |
| 09 | 51.0 | 259.0 | 131.0 | 59.0 |
| 10 | 462.0 | 9.0 | 27.0 | 2.0 |
| 11 | 326.0 | 21.0 | 128.0 | 25.0 |
| 12 | 406.0 | 0.0 | 94.0 | 0.0 |
| 13 | 66.0 | 2.0 | 414.0 | 18.0 |
| 14 | 29.0 | 4.0 | 402.0 | 65.0 |
| 15 | 20.0 | 59.0 | 126.0 | 295.0 |
| 16 | 37.0 | 307.0 | 76.0 | 80.0 |
| 17 | 362.0 | 41.0 | 49.0 | 48.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.671 | -0.144 | -0.673 | -0.403 |
| 02 | 0.752 | -2.234 | -1.022 | 0.344 |
| 03 | -1.09 | 0.519 | 0.383 | -0.658 |
| 04 | -1.358 | -0.754 | -0.49 | 0.978 |
| 05 | 0.569 | -2.034 | 0.621 | -1.421 |
| 06 | -0.958 | -3.903 | 1.201 | -1.298 |
| 07 | -0.516 | -2.819 | 1.157 | -1.818 |
| 08 | -0.705 | -0.313 | 0.435 | 0.206 |
| 09 | -0.879 | 0.722 | 0.046 | -0.737 |
| 10 | 1.298 | -2.484 | -1.489 | -3.573 |
| 11 | 0.951 | -1.725 | 0.023 | -1.561 |
| 12 | 1.17 | -4.4 | -0.281 | -4.4 |
| 13 | -0.628 | -3.573 | 1.189 | -1.868 |
| 14 | -1.421 | -3.126 | 1.16 | -0.643 |
| 15 | -1.77 | -0.737 | 0.008 | 0.852 |
| 16 | -1.189 | 0.891 | -0.49 | -0.439 |
| 17 | 1.055 | -1.09 | -0.918 | -0.938 |