Model info
| Transcription factor | PGR (GeneCards) | ||||||||
| Model | PRGR_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RGvACWYYbTGTdCYb | ||||||||
| Best auROC (human) | 0.97 | ||||||||
| Best auROC (mouse) | 0.957 | ||||||||
| Peak sets in benchmark (human) | 51 | ||||||||
| Peak sets in benchmark (mouse) | 15 | ||||||||
| Aligned words | 315 | ||||||||
| TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
| HGNC | HGNC:8910 | ||||||||
| EntrezGene | GeneID:5241 (SSTAR profile) | ||||||||
| UniProt ID | PRGR_HUMAN | ||||||||
| UniProt AC | P06401 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | PGR expression | ||||||||
| ReMap ChIP-seq dataset list | PGR datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 133.0 | 7.0 | 127.0 | 48.0 |
| 02 | 31.0 | 3.0 | 266.0 | 15.0 |
| 03 | 157.0 | 50.0 | 59.0 | 49.0 |
| 04 | 282.0 | 16.0 | 8.0 | 9.0 |
| 05 | 3.0 | 276.0 | 3.0 | 33.0 |
| 06 | 203.0 | 11.0 | 36.0 | 65.0 |
| 07 | 9.0 | 57.0 | 54.0 | 195.0 |
| 08 | 25.0 | 69.0 | 36.0 | 185.0 |
| 09 | 21.0 | 147.0 | 46.0 | 101.0 |
| 10 | 29.0 | 20.0 | 13.0 | 253.0 |
| 11 | 5.0 | 27.0 | 271.0 | 12.0 |
| 12 | 18.0 | 11.0 | 11.0 | 275.0 |
| 13 | 74.0 | 41.0 | 47.0 | 153.0 |
| 14 | 20.0 | 255.0 | 3.0 | 37.0 |
| 15 | 26.0 | 83.0 | 8.0 | 198.0 |
| 16 | 41.0 | 77.0 | 74.0 | 123.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.517 | -2.252 | 0.471 | -0.484 |
| 02 | -0.905 | -2.894 | 1.205 | -1.585 |
| 03 | 0.681 | -0.444 | -0.283 | -0.464 |
| 04 | 1.263 | -1.526 | -2.14 | -2.039 |
| 05 | -2.894 | 1.241 | -2.894 | -0.845 |
| 06 | 0.936 | -1.864 | -0.762 | -0.188 |
| 07 | -2.039 | -0.316 | -0.369 | 0.896 |
| 08 | -1.11 | -0.13 | -0.762 | 0.844 |
| 09 | -1.274 | 0.616 | -0.525 | 0.245 |
| 10 | -0.969 | -1.319 | -1.715 | 1.155 |
| 11 | -2.522 | -1.037 | 1.223 | -1.786 |
| 12 | -1.417 | -1.864 | -1.864 | 1.238 |
| 13 | -0.061 | -0.636 | -0.504 | 0.655 |
| 14 | -1.319 | 1.163 | -2.894 | -0.735 |
| 15 | -1.072 | 0.052 | -2.14 | 0.911 |
| 16 | -0.636 | -0.022 | -0.061 | 0.439 |