Model info
| Transcription factor | SMARCA1 (GeneCards) | ||||||||
| Model | SMCA1_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vMWRGAAKMAWn | ||||||||
| Best auROC (human) | 0.912 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 442 | ||||||||
| TF family | Myb/SANT domain factors {3.5.1} | ||||||||
| TF subfamily | SMARCA-like factors {3.5.1.5} | ||||||||
| HGNC | HGNC:11097 | ||||||||
| EntrezGene | GeneID:6594 (SSTAR profile) | ||||||||
| UniProt ID | SMCA1_HUMAN | ||||||||
| UniProt AC | P28370 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SMARCA1 expression | ||||||||
| ReMap ChIP-seq dataset list | SMARCA1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 105.0 | 218.0 | 79.0 | 39.0 |
| 02 | 198.0 | 221.0 | 7.0 | 15.0 |
| 03 | 263.0 | 56.0 | 40.0 | 82.0 |
| 04 | 237.0 | 0.0 | 193.0 | 11.0 |
| 05 | 20.0 | 11.0 | 405.0 | 5.0 |
| 06 | 406.0 | 12.0 | 18.0 | 5.0 |
| 07 | 421.0 | 4.0 | 8.0 | 8.0 |
| 08 | 40.0 | 18.0 | 318.0 | 65.0 |
| 09 | 269.0 | 152.0 | 11.0 | 9.0 |
| 10 | 378.0 | 19.0 | 25.0 | 19.0 |
| 11 | 114.0 | 24.0 | 25.0 | 278.0 |
| 12 | 99.0 | 77.0 | 168.0 | 97.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.048 | 0.675 | -0.328 | -1.015 |
| 02 | 0.579 | 0.689 | -2.574 | -1.912 |
| 03 | 0.861 | -0.664 | -0.99 | -0.291 |
| 04 | 0.758 | -4.296 | 0.554 | -2.189 |
| 05 | -1.647 | -2.189 | 1.291 | -2.841 |
| 06 | 1.294 | -2.112 | -1.745 | -2.841 |
| 07 | 1.33 | -3.008 | -2.463 | -2.463 |
| 08 | -0.99 | -1.745 | 1.05 | -0.519 |
| 09 | 0.884 | 0.317 | -2.189 | -2.363 |
| 10 | 1.222 | -1.695 | -1.438 | -1.695 |
| 11 | 0.033 | -1.477 | -1.438 | 0.917 |
| 12 | -0.106 | -0.353 | 0.417 | -0.126 |