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Model info
Transcription factorSox4
ModelSOX4_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnbYCTTTGTYYbb
Best auROC (human)0.637
Best auROC (mouse)0.981
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup C {4.1.1.3}
MGIMGI:98366
EntrezGeneGeneID:20677
(SSTAR profile)
UniProt IDSOX4_MOUSE
UniProt ACQ06831
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.50591
0.0005 12.35811
0.0001 16.216430000000003
GTEx tissue expression atlas Sox4 expression
Motifs in JASPAR
MA0867.1 (SOX4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.09.021.031.07.050.042.047.08.059.048.040.03.053.022.060.0
021.04.07.06.08.083.021.059.00.086.016.031.05.092.010.071.0
031.03.04.06.02.0201.03.059.00.050.00.04.01.0150.00.016.0
041.00.01.02.040.08.03.0353.00.01.01.05.013.02.02.068.0
050.02.02.050.00.00.00.011.00.02.01.04.01.05.011.0411.0
060.00.00.01.00.01.00.08.02.00.00.012.00.010.03.0463.0
070.00.02.00.00.07.02.02.00.01.02.00.09.026.0431.018.0
081.00.02.06.00.01.00.033.03.06.05.0423.01.00.00.019.0
090.01.00.04.00.01.03.03.00.04.02.01.07.0154.063.0257.0
101.04.01.01.02.098.05.055.06.035.09.018.09.0166.025.065.0
116.07.05.00.024.0109.028.0142.02.012.07.019.06.046.048.039.0
1213.09.014.02.024.065.029.056.013.040.018.017.018.075.051.056.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-4.4-1.215-0.392-0.008-1.4540.4650.2930.404-1.3280.630.4250.244-2.2340.523-0.3460.646
02-3.126-1.975-1.454-1.6-1.3280.969-0.3920.63-4.41.004-0.658-0.008-1.771.072-1.1140.814
03-3.126-2.234-1.975-1.6-2.5841.851-2.2340.63-4.40.465-4.4-1.975-3.1261.559-4.4-0.658
04-3.126-4.4-3.126-2.5840.244-1.328-2.2342.413-4.4-3.126-3.126-1.77-0.86-2.584-2.5840.771
05-4.4-2.584-2.5840.465-4.4-4.4-4.4-1.022-4.4-2.584-3.126-1.975-3.126-1.77-1.0222.565
06-4.4-4.4-4.4-3.126-4.4-3.126-4.4-1.328-2.584-4.4-4.4-0.938-4.4-1.114-2.2342.684
07-4.4-4.4-2.584-4.4-4.4-1.454-2.584-2.584-4.4-3.126-2.584-4.4-1.215-0.1812.613-0.543
08-3.126-4.4-2.584-1.6-4.4-3.126-4.40.054-2.234-1.6-1.772.594-3.126-4.4-4.4-0.49
09-4.4-3.126-4.4-1.975-4.4-3.126-2.234-2.234-4.4-1.975-2.584-3.126-1.4541.5850.6952.096
10-3.126-1.975-3.126-3.126-2.5841.135-1.770.56-1.60.112-1.215-0.543-1.2151.66-0.220.726
11-1.6-1.454-1.77-4.4-0.261.241-0.1081.504-2.584-0.938-1.454-0.49-1.60.3830.4250.219
12-0.86-1.215-0.788-2.584-0.260.726-0.0740.578-0.860.244-0.543-0.599-0.5430.8680.4850.578