Model info
Transcription factorAlx1
ModelALX1_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length12
Quality
B
Motif rank
0
ConsensusvTRATYGnATTA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words33
TF familyPaired-related HD factors{3.1.3}
TF subfamilyALX{3.1.3.1}
MGI104621
EntrezGene216285
UniProt IDALX1_MOUSE
UniProt ACQ8C8B0
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.4381
0.0005 6.188834999999999
0.0001 7.62084
GTEx tissue expression atlas Alx1 expression
Motifs in JASPAR
PCM
ACGT
0113.5426.4818.4672.51
021.9862.9790.026.036
0323.940.9933.0892.979
0426.9181.9860.02.096
050.02.9790.028.021
060.9937.063.97218.975
0715.0040.015.9960.0
0811.0327.94311.0320.993
0924.050.03.9722.979
103.0890.00.99326.918
111.9860.9930.99327.028
1225.7051.7651.7651.765
PWM
ACGT
010.515-0.1590.08-0.938
02-1.107-0.808-2.3051.139
031.058-1.537-0.78-0.808
041.171-1.107-2.305-1.069
05-2.305-0.808-2.3051.21
06-1.537-0.083-0.5780.835
070.611-2.3050.672-2.305
080.3230.0220.323-1.537
091.062-2.305-0.578-0.808
10-0.78-2.305-1.5371.171
11-1.107-1.537-1.5371.175
121.127-1.188-1.188-1.188