Model info
Transcription factorArid5b
ModelARI5B_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
C
Motif rank
0
ConsensusnbYKnRTATTSKd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words19
TF familyARID-related factors{3.7.1}
TF subfamilyARID5{3.7.1.5}
MGI2175912
EntrezGene71371
UniProt IDARI5B_MOUSE
UniProt ACQ8BM75
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.14272
0.0005 5.71598
0.0001 6.88743
GTEx tissue expression atlas Arid5b expression
ReMap ChIP-seq dataset list Arid5b datasets
Motifs in JASPAR
PCM
ACGT
013.251.255.255.25
022.04.06.03.0
030.04.03.08.0
040.02.05.08.0
055.01.05.04.0
063.01.010.01.0
070.00.00.015.0
0813.00.02.00.0
090.02.00.013.0
100.01.01.013.0
112.04.08.01.0
122.01.04.08.0
133.751.756.752.75
PWM
ACGT
01-0.12-0.8320.2920.292
02-0.5030.0550.411-0.186
03-1.8780.055-0.1860.673
04-1.878-0.5030.2490.673
050.249-0.9710.2490.055
06-0.186-0.9710.88-0.971
07-1.878-1.878-1.8781.264
081.128-1.878-0.503-1.878
09-1.878-0.503-1.8781.128
10-1.878-0.971-0.9711.128
11-0.5030.0550.673-0.971
12-0.503-0.9710.0550.673
130.0-0.6010.517-0.256