Model info
Transcription factorArid5b
ModelARI5B_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
C
Motif rank
0
ConsensusnbYKnRTATTSKd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words19
TF familyARID-related factors{3.7.1}
TF subfamilyARID5{3.7.1.5}
MGI2175912
EntrezGene71371
UniProt IDARI5B_MOUSE
UniProt ACQ8BM75
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.146665
0.0005 5.71549
0.0001 6.88536
GTEx tissue expression atlas Arid5b expression
Motifs in JASPAR
PCM
ACGT
013.251.255.255.25
022.04.06.03.0
030.04.03.08.0
040.02.05.08.0
055.01.05.04.0
063.01.010.01.0
070.00.00.015.0
0813.00.02.00.0
090.02.00.013.0
100.01.01.013.0
112.04.08.01.0
122.01.04.08.0
133.751.756.752.75
PWM
ACGT
01-0.12-0.8320.2920.292
02-0.5030.0550.411-0.186
03-1.8780.055-0.1860.673
04-1.878-0.5030.2490.673
050.249-0.9710.2490.055
06-0.186-0.9710.88-0.971
07-1.878-1.878-1.8781.264
081.128-1.878-0.503-1.878
09-1.878-0.503-1.8781.128
10-1.878-0.971-0.9711.128
11-0.5030.0550.673-0.971
12-0.503-0.9710.0550.673
130.0-0.6010.517-0.256