Model info
Transcription factorBarx1
ModelBARX1_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
C
Motif rank
0
ConsensusbbWAAdKGYYWh
Best auROC (human)0.5291255787838475
Best auROC (mouse)0.8185742911088966
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words150
TF familyNK-related factors{3.1.2}
TF subfamilyBARX{3.1.2.2}
MGI103124
EntrezGene12022
UniProt IDBARX1_MOUSE
UniProt ACQ9ER42
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.78797
0.0005 6.40138
0.0001 7.61696
GTEx tissue expression atlas Barx1 expression
Motifs in JASPAR
PCM
ACGT
0120.028.050.052.0
0221.049.028.052.0
0330.018.07.095.0
04119.012.018.01.0
05146.03.00.01.0
0619.015.039.077.0
0715.01.045.089.0
082.08.0139.01.0
0912.043.06.089.0
1022.024.02.0102.0
1122.016.018.094.0
1228.026.018.078.0
PWM
ACGT
01-0.601-0.2810.280.318
02-0.5550.26-0.2810.318
03-0.215-0.7-1.5470.91
041.132-1.073-0.7-2.845
051.335-2.21-3.432-2.845
06-0.649-0.8690.0380.703
07-0.869-2.8450.1770.845
08-2.478-1.4321.286-2.845
09-1.0730.133-1.6760.845
10-0.511-0.428-2.4780.98
11-0.511-0.809-0.70.899
12-0.281-0.352-0.70.715