Model info
| Transcription factor | BCL6B (GeneCards) | ||||||||
| Model | BCL6B_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nYGCTTTCTAG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 66 | ||||||||
| TF family | More than 3 adjacent zinc finger factors {2.3.3} | ||||||||
| TF subfamily | BCL6 factors {2.3.3.22} | ||||||||
| HGNC | HGNC:1002 | ||||||||
| EntrezGene | GeneID:255877 (SSTAR profile) | ||||||||
| UniProt ID | BCL6B_HUMAN | ||||||||
| UniProt AC | Q8N143 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | BCL6B expression | ||||||||
| ReMap ChIP-seq dataset list | BCL6B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 23.0 | 18.0 | 11.0 | 14.0 |
| 02 | 3.0 | 24.0 | 1.0 | 38.0 |
| 03 | 4.0 | 0.0 | 61.0 | 1.0 |
| 04 | 0.0 | 64.0 | 0.0 | 2.0 |
| 05 | 9.0 | 0.0 | 0.0 | 57.0 |
| 06 | 0.0 | 1.0 | 0.0 | 65.0 |
| 07 | 0.0 | 0.0 | 0.0 | 66.0 |
| 08 | 0.0 | 66.0 | 0.0 | 0.0 |
| 09 | 0.0 | 0.0 | 29.0 | 37.0 |
| 10 | 64.25 | 0.25 | 1.25 | 0.25 |
| 11 | 0.25 | 0.25 | 65.25 | 0.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.315 | 0.082 | -0.376 | -0.154 |
| 02 | -1.467 | 0.356 | -2.148 | 0.8 |
| 03 | -1.246 | -2.819 | 1.263 | -2.148 |
| 04 | -2.819 | 1.31 | -2.819 | -1.751 |
| 05 | -0.558 | -2.819 | -2.819 | 1.196 |
| 06 | -2.819 | -2.148 | -2.819 | 1.325 |
| 07 | -2.819 | -2.819 | -2.819 | 1.34 |
| 08 | -2.819 | 1.34 | -2.819 | -2.819 |
| 09 | -2.819 | -2.819 | 0.538 | 0.774 |
| 10 | 1.314 | -2.605 | -2.033 | -2.605 |
| 11 | -2.605 | -2.605 | 1.329 | -2.605 |