Model info
| Transcription factor | ARNTL (GeneCards) | ||||||||
| Model | BMAL1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nSCAYGTGhbb | ||||||||
| Best auROC (human) | 0.864 | ||||||||
| Best auROC (mouse) | 0.875 | ||||||||
| Peak sets in benchmark (human) | 18 | ||||||||
| Peak sets in benchmark (mouse) | 15 | ||||||||
| Aligned words | 410 | ||||||||
| TF family | PAS domain factors {1.2.5} | ||||||||
| TF subfamily | Arnt-like factors {1.2.5.2} | ||||||||
| HGNC | HGNC:701 | ||||||||
| EntrezGene | GeneID:406 (SSTAR profile) | ||||||||
| UniProt ID | BMAL1_HUMAN | ||||||||
| UniProt AC | O00327 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ARNTL expression | ||||||||
| ReMap ChIP-seq dataset list | ARNTL datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 66.0 | 66.0 | 152.0 | 126.0 |
| 02 | 71.0 | 214.0 | 120.0 | 5.0 |
| 03 | 27.0 | 380.0 | 1.0 | 2.0 |
| 04 | 368.0 | 5.0 | 14.0 | 23.0 |
| 05 | 10.0 | 300.0 | 14.0 | 86.0 |
| 06 | 3.0 | 9.0 | 390.0 | 8.0 |
| 07 | 6.0 | 0.0 | 5.0 | 399.0 |
| 08 | 0.0 | 2.0 | 400.0 | 8.0 |
| 09 | 186.0 | 109.0 | 11.0 | 104.0 |
| 10 | 21.0 | 202.0 | 120.0 | 67.0 |
| 11 | 57.0 | 131.0 | 59.0 | 163.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.432 | -0.432 | 0.389 | 0.204 |
| 02 | -0.361 | 0.729 | 0.156 | -2.772 |
| 03 | -1.294 | 1.3 | -3.727 | -3.391 |
| 04 | 1.268 | -2.772 | -1.903 | -1.446 |
| 05 | -2.202 | 1.064 | -1.903 | -0.173 |
| 06 | -3.139 | -2.293 | 1.326 | -2.393 |
| 07 | -2.629 | -4.236 | -2.772 | 1.348 |
| 08 | -4.236 | -3.391 | 1.351 | -2.393 |
| 09 | 0.589 | 0.061 | -2.118 | 0.014 |
| 10 | -1.531 | 0.671 | 0.156 | -0.418 |
| 11 | -0.575 | 0.242 | -0.542 | 0.459 |