Model info
Transcription factorT
ModelBRAC_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
1
ConsensusdRSTGWSARdd
Best auROC (human)0.8001828472272543
Best auROC (mouse)0.7572060780452105
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors{6.5.1}
TF subfamilyT (Brachyury){6.5.1.0.1}
HGNC11515
EntrezGene6862
UniProt IDBRAC_HUMAN
UniProt ACO15178
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.49873
0.0005 6.33397
0.0001 7.87312
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
PCM
ACGT
01234.044.0105.0117.0
02124.019.0291.066.0
0317.0127.0350.06.0
047.05.02.0486.0
053.00.0490.07.0
06104.03.055.0338.0
0712.055.0381.052.0
08471.05.022.02.0
09348.05.0129.018.0
10255.054.0118.073.0
11148.057.0124.0171.0
PWM
ACGT
010.621-1.022-0.172-0.065
02-0.008-1.8180.838-0.628
03-1.920.0161.022-2.819
04-2.694-2.961-3.5731.349
05-3.325-4.41.357-2.694
06-0.181-3.325-0.8050.987
07-2.234-0.8051.106-0.86
081.317-2.961-1.681-3.573
091.016-2.9610.031-1.868
100.707-0.823-0.057-0.529
110.167-0.771-0.0080.31