Model info
Transcription factorT
ModelBRAC_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length25
Quality
B
Motif rank
0
ConsensusdKKhvCWbhdddSTGTSWRdKhnKb
Best auROC (human)0.704
Best auROC (mouse)0.814
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words435
TF familyBrachyury-related factors {6.5.1}
TF subfamilyT (Brachyury) {6.5.1.0.1}
MGIMGI:98472
EntrezGeneGeneID:20997
(SSTAR profile)
UniProt IDBRAC_MOUSE
UniProt ACP20293
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.96311
0.0005 5.92121
0.0001 7.9379100000000005
GTEx tissue expression atlas T expression
Motifs in JASPAR
PCM
ACGT
0177.067.084.0207.0
0238.030.048.0319.0
0317.016.0150.0252.0
04122.079.062.0172.0
0592.0153.0149.041.0
0612.0369.017.037.0
07327.026.018.064.0
0847.0151.071.0166.0
09169.0104.044.0118.0
10123.043.060.0209.0
11111.050.0222.052.0
1288.074.084.0189.0
1320.0219.0171.025.0
147.08.01.0419.0
156.021.0399.09.0
1632.040.010.0353.0
1710.0186.0175.064.0
18342.018.017.058.0
19304.038.061.032.0
2087.045.046.0257.0
2115.056.072.0292.0
2255.0168.048.0164.0
23162.0104.090.079.0
2437.067.068.0263.0
2548.073.0204.0110.0
PWM
ACGT
01-0.34-0.476-0.2540.637
02-1.026-1.252-0.8011.067
03-1.784-1.840.3180.833
040.113-0.314-0.5520.453
05-0.1650.3370.311-0.953
06-2.0991.212-1.784-1.052
071.092-1.388-1.732-0.521
08-0.8210.324-0.4190.418
090.436-0.044-0.8850.081
100.122-0.907-0.5840.647
110.02-0.7610.707-0.723
12-0.208-0.379-0.2540.547
13-1.6340.6930.448-1.425
14-2.561-2.45-3.7791.339
15-2.686-1.5891.29-2.35
16-1.191-0.977-2.2591.168
17-2.2590.5310.471-0.521
181.136-1.732-1.784-0.617
191.019-1.026-0.567-1.191
20-0.22-0.863-0.8420.852
21-1.898-0.651-0.4050.979
22-0.6680.43-0.8010.406
230.394-0.044-0.186-0.314
24-1.052-0.476-0.4610.875
25-0.801-0.3920.6230.011