Model info
Transcription factorT
ModelBRAC_MOUSE.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
1
ConsensusdvbSTGTSWRdKb
Best auROC (human)0.6431025301476021
Best auROC (mouse)0.7547994474739168
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)10
Aligned words500
TF familyBrachyury-related factors{6.5.1}
TF subfamilyT (Brachyury){6.5.1.0.1}
MGI98472
EntrezGene20997
UniProt IDBRAC_MOUSE
UniProt ACP20293
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.43541
0.0005 6.24121
0.0001 7.85101
GTEx tissue expression atlas T expression
ReMap ChIP-seq dataset list T datasets
Motifs in JASPAR
PCM
ACGT
01133.042.073.0252.0
02126.079.0256.039.0
0381.084.0113.0222.0
0416.0263.0200.021.0
054.013.03.0480.0
060.09.0474.017.0
0714.018.016.0452.0
0811.0210.0243.036.0
09380.016.020.084.0
10350.065.066.019.0
11118.052.056.0274.0
1218.057.063.0362.0
1333.0197.082.0188.0
PWM
ACGT
010.061-1.067-0.5290.695
020.008-0.4520.711-1.138
03-0.427-0.392-0.10.569
04-1.9750.7370.465-1.725
05-3.126-2.163-3.3251.336
06-4.4-2.4841.324-1.92
07-2.096-1.868-1.9751.276
08-2.3110.5140.659-1.215
091.104-1.975-1.77-0.392
101.022-0.643-0.628-1.818
11-0.057-0.86-0.7880.778
12-1.868-0.771-0.6731.055
13-1.2980.45-0.4150.404