Model info
Transcription factorBrca1
ModelBRCA1_MOUSE.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length9
Quality
D
Motif rank
0
ConsensusbKKbKGTTG
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words72
TF family
TF subfamily
MGI104537
EntrezGene12189
UniProt IDBRCA1_MOUSE
UniProt ACP48754
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.35853
0.0005 5.99037
0.0001 7.25077
GTEx tissue expression atlas Brca1 expression
ReMap ChIP-seq dataset list Brca1 datasets
Motifs in JASPAR
PCM
ACGT
0110.45314.31121.0826.727
0213.750.019.99338.827
032.0349.08411.11950.333
044.06925.00934.9698.524
052.03410.87432.72526.938
060.00.063.179.4
070.02.0340.070.536
080.00.00.072.57
094.5775.31460.1372.543
PWM
ACGT
01-0.511-0.2220.1420.369
02-0.26-2.8870.0920.731
03-1.822-0.638-0.4550.984
04-1.3190.3060.629-0.694
05-1.822-0.4750.5650.377
06-2.887-2.8871.207-0.607
07-2.887-1.822-2.8871.316
08-2.887-2.887-2.8871.344
09-1.224-1.1021.159-1.671