Model info
Transcription factorCDX2
ModelCDX2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdTTbATKGShbY
Best auROC (human)0.9230495654180837
Best auROC (mouse)0.9821167366315617
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)23
Aligned words151
TF familyHOX-related factors{3.1.1}
TF subfamilyCDX (Caudal type homeobox){3.1.1.9}
HGNC1806
EntrezGene1045
UniProt IDCDX2_HUMAN
UniProt ACQ99626
Comment
Downloads pcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.63781
0.0005 6.44232
0.0001 8.03284
PCM
ACGT
0123.018.032.078.0
029.011.09.0122.0
0316.00.010.0125.0
0413.037.026.075.0
05149.01.01.00.0
061.08.02.0140.0
077.00.047.097.0
0828.01.0122.00.0
092.0115.020.014.0
1040.032.013.066.0
1121.030.053.047.0
122.035.026.088.0
PWM
ACGT
01-0.475-0.706-0.1590.709
02-1.336-1.158-1.3361.151
03-0.816-3.437-1.2431.175
04-1.007-0.019-0.3580.67
051.349-2.851-2.851-3.437
06-2.851-1.439-2.4841.287
07-1.553-3.4370.2130.924
08-0.288-2.8511.151-3.437
09-2.4841.092-0.607-0.939
100.056-0.159-1.0070.545
11-0.561-0.2220.330.213
12-2.484-0.073-0.3580.828